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The map label for this gene is cmoA1

Identifier: 51596218

GI number: 51596218

Start: 2228366

End: 2229091

Strand: Direct

Name: cmoA1

Synonym: YPTB1886

Alternate gene names: 51596218

Gene position: 2228366-2229091 (Clockwise)

Preceding gene: 51596217

Following gene: 51596219

Centisome position: 46.97

GC content: 31.82

Gene sequence:

>726_bases
ATGAACATTGATAAAATATTTGAAAATCCATCTAATTTAAGGTCATTCGAATTTAATAATGATGTTTGTAAAGTGTTCGA
TGATATGGTTTCCCGCAGCGTTCCGGGCTATCACAACATTCAGGATATTATCTCTTTGACTTATGATGAATTCTCTCAGA
ATAGGGTTTTTATTGATGTAGGTTGTTCTACAGGCACAACCATCGCAAAAATCCTGTCTGAAAACCAAGTAAATTACTGT
TATGGAATTGATATCTCAGAAAGTATGCTAGCAATAGCACAAGAAAAATGTGGTGAACATGAAAGTCTGGTCACCTTTAA
AAACTGTAATTTACTTAATGGTACTGATAATGTAATAAACTCAGAAAAAGTTCCAGACTTCATAATACTTAACCTCGTTT
TACAGTTTATTAGACCACCAGAAAGAAAGAAATTCATTACCAATATAAAATCGCTATGCTCAAGTTCAACCTTGATGCTC
GTTTTTGAAAAAATTATTTTCAATGACGCCGAAATTAATATGAAATACATAGATAGTTACCTAAAATGGAAAGGTAAGAA
TGGCTATTCTGAATCCGAAGTTTCTAATAAACGTAAAGCACTAGAAAATAAACTCATCCCATATCTTCATGAGGAAAACA
TTGAGCTATTTAAATCCTCTGGATTTAATTCTGTCGAAATATGTTTTTCATTCCTTAATTTTAGAGGGTATTTATGTCGA
TGCTGA

Upstream 100 bases:

>100_bases
ACTTCAGGTTTTACATTACATTATATTGAAGAACCGAGACATCCTGATAGTAACCATCGTGCACATCACATTCCTTATTT
TACGATTTTAGAGTTCCGCT

Downstream 100 bases:

>100_bases
TCGCTGATATCTATAATGATACACTTTATTATCCTCTAAGTGAATCAGAGTATATTGTATTCTTCTGTGCTTCTGAGCGA
AATGCCAGAATTTATAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNIDKIFENPSNLRSFEFNNDVCKVFDDMVSRSVPGYHNIQDIISLTYDEFSQNRVFIDVGCSTGTTIAKILSENQVNYC
YGIDISESMLAIAQEKCGEHESLVTFKNCNLLNGTDNVINSEKVPDFIILNLVLQFIRPPERKKFITNIKSLCSSSTLML
VFEKIIFNDAEINMKYIDSYLKWKGKNGYSESEVSNKRKALENKLIPYLHEENIELFKSSGFNSVEICFSFLNFRGYLCR
C

Sequences:

>Translated_241_residues
MNIDKIFENPSNLRSFEFNNDVCKVFDDMVSRSVPGYHNIQDIISLTYDEFSQNRVFIDVGCSTGTTIAKILSENQVNYC
YGIDISESMLAIAQEKCGEHESLVTFKNCNLLNGTDNVINSEKVPDFIILNLVLQFIRPPERKKFITNIKSLCSSSTLML
VFEKIIFNDAEINMKYIDSYLKWKGKNGYSESEVSNKRKALENKLIPYLHEENIELFKSSGFNSVEICFSFLNFRGYLCR
C
>Mature_241_residues
MNIDKIFENPSNLRSFEFNNDVCKVFDDMVSRSVPGYHNIQDIISLTYDEFSQNRVFIDVGCSTGTTIAKILSENQVNYC
YGIDISESMLAIAQEKCGEHESLVTFKNCNLLNGTDNVINSEKVPDFIILNLVLQFIRPPERKKFITNIKSLCSSSTLML
VFEKIIFNDAEINMKYIDSYLKWKGKNGYSESEVSNKRKALENKLIPYLHEENIELFKSSGFNSVEICFSFLNFRGYLCR
C

Specific function: Catalyzes the conversion of 5-methoxyuridine (mo5U) to uridine-5-oxyacetic acid (cmo5U) at position 34 in tRNA. May also participate in the methylation of uridine-5-oxyacetic acid (cmo5U) to uridine-5-oxyacetic acid methyl ester (mcmo5U)

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoA family

Homologues:

Organism=Escherichia coli, GI1788177, Length=234, Percent_Identity=30.3418803418803, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CMOA1_YERPB (B2K217)

Other databases:

- EMBL:   CP001048
- RefSeq:   YP_001872357.1
- ProteinModelPortal:   B2K217
- SMR:   B2K217
- GeneID:   6259289
- GenomeReviews:   CP001048_GR
- KEGG:   ypb:YPTS_1933
- HOGENOM:   HBG296860
- OMA:   PYSENEN
- ProtClustDB:   CLSK2307825
- HAMAP:   MF_01589
- InterPro:   IPR013217
- InterPro:   IPR005271
- PIRSF:   PIRSF006325

Pfam domain/function: PF08242 Methyltransf_12

EC number: NA

Molecular weight: Translated: 27715; Mature: 27715

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: BINDING 37-37 BINDING 84-84 BINDING 131-131 BINDING 198-198

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDKIFENPSNLRSFEFNNDVCKVFDDMVSRSVPGYHNIQDIISLTYDEFSQNRVFIDV
CCHHHHHCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEE
GCSTGTTIAKILSENQVNYCYGIDISESMLAIAQEKCGEHESLVTFKNCNLLNGTDNVIN
CCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCC
SEKVPDFIILNLVLQFIRPPERKKFITNIKSLCSSSTLMLVFEKIIFNDAEINMKYIDSY
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH
LKWKGKNGYSESEVSNKRKALENKLIPYLHEENIELFKSSGFNSVEICFSFLNFRGYLCR
HHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCCCC
C
C
>Mature Secondary Structure
MNIDKIFENPSNLRSFEFNNDVCKVFDDMVSRSVPGYHNIQDIISLTYDEFSQNRVFIDV
CCHHHHHCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEE
GCSTGTTIAKILSENQVNYCYGIDISESMLAIAQEKCGEHESLVTFKNCNLLNGTDNVIN
CCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCCCC
SEKVPDFIILNLVLQFIRPPERKKFITNIKSLCSSSTLMLVFEKIIFNDAEINMKYIDSY
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH
LKWKGKNGYSESEVSNKRKALENKLIPYLHEENIELFKSSGFNSVEICFSFLNFRGYLCR
HHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCCCC
C
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA