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The map label for this gene is dmsB

Identifier: 51595156

GI number: 51595156

Start: 969128

End: 969745

Strand: Direct

Name: dmsB

Synonym: YPTB0806

Alternate gene names: 51595156

Gene position: 969128-969745 (Clockwise)

Preceding gene: 51595155

Following gene: 51595157

Centisome position: 20.43

GC content: 50.16

Gene sequence:

>618_bases
ATGACAACGCAATATGGTTTTTACATCGACTCCAGCCGTTGTACAGGGTGTAAAACGTGCGAGTTGGCCTGCAAAGACTT
TAAAAATCTCTCACCGGATGTCAGCTTTAGACGTATTTACGAATACGCTGGCGGTGATTGGCAGCAGGATAACGGGACAT
GGCACCAGAATGTGTTCGCTTACTACCTGTCTATCGCCTGTAACCACTGTAGTGACCCCGCCTGTACTAAGGTGTGTCCG
AGTGGTGCTATGCATAAGCGTAATGATGGTTTTGTGGTGGTTAACGAAGATATCTGCATCGGTTGCCGCTACTGCCATAT
GGCCTGCCCTTACGGTGCGCCGCAATATGATGCTGAAAAAGGGCACATGACCAAGTGCGACGGTTGTTACGAACGGGTGG
CGGTAGGGAAGAAACCTATCTGTGTCGATTCCTGTCCACTGCGTGCATTGGATATGGCCCCTATCGATGAATTACGCGAA
AAATACGGTGATTTAGCTGAAATTGCGCCTCTGCCTGCCGCTCACTTCACGCTGCCGAATATCGTACTAAAACCTAATGC
CAACAGCCGCCCGGTCAGAGATACCACCGGTCATCTGGCAAACCCGAAGGAGGTATAA

Upstream 100 bases:

>100_bases
GTATCAACGTATTGACCACCCAGCGCCCCTCCCCGTTGGCGAAAGGGAACCCATCCCACACCAACCTCGTTCAAGTCGCC
AAGGCATAAGGAGCTGACTG

Downstream 100 bases:

>100_bases
CATGGGCTCAGGATGGCATGAATGGCCACTAATGGTCTTTACCGTACTGGGGCAGTGTGTGGTCGGGGGCTTTATTGTTC
TCGGTCTGGCACTGATATTC

Product: anaerobic dimethyl sulfoxide reductase, subunit B

Products: Reduced form of N-Oxide compounds [C]

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTTQYGFYIDSSRCTGCKTCELACKDFKNLSPDVSFRRIYEYAGGDWQQDNGTWHQNVFAYYLSIACNHCSDPACTKVCP
SGAMHKRNDGFVVVNEDICIGCRYCHMACPYGAPQYDAEKGHMTKCDGCYERVAVGKKPICVDSCPLRALDMAPIDELRE
KYGDLAEIAPLPAAHFTLPNIVLKPNANSRPVRDTTGHLANPKEV

Sequences:

>Translated_205_residues
MTTQYGFYIDSSRCTGCKTCELACKDFKNLSPDVSFRRIYEYAGGDWQQDNGTWHQNVFAYYLSIACNHCSDPACTKVCP
SGAMHKRNDGFVVVNEDICIGCRYCHMACPYGAPQYDAEKGHMTKCDGCYERVAVGKKPICVDSCPLRALDMAPIDELRE
KYGDLAEIAPLPAAHFTLPNIVLKPNANSRPVRDTTGHLANPKEV
>Mature_204_residues
TTQYGFYIDSSRCTGCKTCELACKDFKNLSPDVSFRRIYEYAGGDWQQDNGTWHQNVFAYYLSIACNHCSDPACTKVCPS
GAMHKRNDGFVVVNEDICIGCRYCHMACPYGAPQYDAEKGHMTKCDGCYERVAVGKKPICVDSCPLRALDMAPIDELREK
YGDLAEIAPLPAAHFTLPNIVLKPNANSRPVRDTTGHLANPKEV

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787122, Length=205, Percent_Identity=85.3658536585366, Blast_Score=381, Evalue=1e-107,
Organism=Escherichia coli, GI1787872, Length=205, Percent_Identity=84.390243902439, Blast_Score=379, Evalue=1e-107,
Organism=Escherichia coli, GI1787749, Length=161, Percent_Identity=33.5403726708075, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1790326, Length=166, Percent_Identity=30.7228915662651, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1789370, Length=201, Percent_Identity=31.3432835820896, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI226510944, Length=149, Percent_Identity=36.9127516778523, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI2367245, Length=159, Percent_Identity=32.7044025157233, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI2367345, Length=170, Percent_Identity=31.1764705882353, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787478, Length=121, Percent_Identity=35.5371900826446, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1787740, Length=126, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789067, Length=166, Percent_Identity=32.5301204819277, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI87082179, Length=161, Percent_Identity=29.8136645962733, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1787963, Length=162, Percent_Identity=28.3950617283951, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788811, Length=150, Percent_Identity=31.3333333333333, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87082180, Length=146, Percent_Identity=29.4520547945205, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 22790; Mature: 22659

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
7.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTQYGFYIDSSRCTGCKTCELACKDFKNLSPDVSFRRIYEYAGGDWQQDNGTWHQNVFA
CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHH
YYLSIACNHCSDPACTKVCPSGAMHKRNDGFVVVNEDICIGCRYCHMACPYGAPQYDAEK
HHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEEECCCEEEEEHHHHEECCCCCCCCCCCC
GHMTKCDGCYERVAVGKKPICVDSCPLRALDMAPIDELREKYGDLAEIAPLPAAHFTLPN
CCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCC
IVLKPNANSRPVRDTTGHLANPKEV
EEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TTQYGFYIDSSRCTGCKTCELACKDFKNLSPDVSFRRIYEYAGGDWQQDNGTWHQNVFA
CCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHH
YYLSIACNHCSDPACTKVCPSGAMHKRNDGFVVVNEDICIGCRYCHMACPYGAPQYDAEK
HHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEEECCCEEEEEHHHHEECCCCCCCCCCCC
GHMTKCDGCYERVAVGKKPICVDSCPLRALDMAPIDELREKYGDLAEIAPLPAAHFTLPN
CCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCC
IVLKPNANSRPVRDTTGHLANPKEV
EEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Iron-Sulfur Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]