Click here to switch to the map view.

The map label for this gene is ydcR [C]

Identifier: 50843772

GI number: 50843772

Start: 2544421

End: 2545818

Strand: Direct

Name: ydcR [C]

Synonym: PPA2337

Alternate gene names: 50843772

Gene position: 2544421-2545818 (Clockwise)

Preceding gene: 50843770

Following gene: 50843773

Centisome position: 99.38

GC content: 58.87

Gene sequence:

>1398_bases
GTGAGCAGCACAAACCACATCACCAGGCAACCTGTTCCTCCGACCGATAGCGTGCGCGTCAAAGCCGCCGTTGCTGCTCA
CGAGGCCGCTGACGCTGCTACCGACCGCCGAGTCGACACCACCTTTGACAAGTTCCACGATCGGTATTCCACCCGCTCCC
TGGGATTGAAAACCTCTCCCGTCCGTGCCCTGTTCGCGGTAGCGAATCGCCCCGAGGTCGTTTCCTTAGCCGGTGGTATG
CCTAACATTGCCGACCTCCCTCTTGACGTCGTCAGTGAGTCGTTGAAGGAGCTCGTTGATACTCGCGGCACTGTCGTTAT
GCAATACGGGTCGGGGCAGGGTGAACCTGAGATGCGCAAGCACATCTGCGAGGTGATGGCCGTTGAGGGGCTCGTCGCAG
ACCCTGATGACGTCACTGTCACGTGTGGTTCTCAGCAGGGCCTGGATCTCGTCACGCGCATTTTTTGCAACCCAAGCGAC
GTCATTATGGCCGAGTCGCCGGCTTATGTCGGGGCGCTCAATACCTTCGCCTCGTACCAAACTGAGGTCATTCACGTCGA
CATGGACGACAGCGGGTTGGTTCCGGAATCCCTGCGTGAGAAAGTGACTGCAGCGCGTCAAGACGGCAAGTCGGTGAAGT
TCCTTTACACGGTTCCTAACTACTCGAACCCGTCGGGAATCTCGCAATCCACCGAGCGTCGCCGGGAGATCCTAGCGGTG
GCTGACGAGCTGGATCTGTTGGTGGTTGAGGACAACCCGTACGGGTTACTCAACCTCGATGGTGATCCACTGCCGACGTT
GAAGTCGATGGATCCCGACAACGTCGTGTACTTGGGGTCCTTCTCCAAGACATTCGCGCCAGGCTTCCGCATCGGTTGGG
TTCTGTCGCCGTCGTTCGTACGCGACAAACTGGTTCTTGCCCAGGAGTCGGCGACCTTGTGCCCGCCGGTCTTTTCCCAG
TTTGCTGTCTCGAGCTACCTGGCCCATTGGGATTGGCGTGCCCAGGTGGATAGCTTCATCAATATGTACCGCATCCGTCG
TGACACTATGCTGGCCTCGTTGGCTGAGACTATGCCTGAGGGGACGACGTGGTCTCACCCATCTGGCGGGTTCTTTGTCT
GGTTGACGATGCCGGGAGCGATCGATTCTGCCGCCATGCTTCCTCGAGCTGTGACGAAGTTTGTCGCTTATACGCCGGGG
ACGGCGTTCTACGCGGATGGTCGTGGTCAGCGCAATATTCGCCTGTCGTTCTGTTACCCGACTCCTGAGCGCATCAAAGT
CGGTGTCGAGAGACTGGCTGGTGTGATGCGTGAAGAGCTGGAAATCGCCGAGACGTTCGGGCTGGCTGACGAGCGGCGTC
ATTCCCGCGATTTGGGGCCTGGTCCGAACTTGGCGTGA

Upstream 100 bases:

>100_bases
CCTCACCGCGCCCCGCTGTGACGTCCGATGGGTGAAATAGACCACACCTGGGTGAGTGTCATTCTAGATTTCCGGGTCTG
CGGTGGGGCACAGTGGGAGG

Downstream 100 bases:

>100_bases
TTCTGACAGGGATCAAACCCTGCAGCGATGCGACTCCAATTCGCGTTCTATAGATATAACGTTATGTCGACTTAGCTATA
TATGGAAGAAGGAGCTGCCG

Product: aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSSTNHITRQPVPPTDSVRVKAAVAAHEAADAATDRRVDTTFDKFHDRYSTRSLGLKTSPVRALFAVANRPEVVSLAGGM
PNIADLPLDVVSESLKELVDTRGTVVMQYGSGQGEPEMRKHICEVMAVEGLVADPDDVTVTCGSQQGLDLVTRIFCNPSD
VIMAESPAYVGALNTFASYQTEVIHVDMDDSGLVPESLREKVTAARQDGKSVKFLYTVPNYSNPSGISQSTERRREILAV
ADELDLLVVEDNPYGLLNLDGDPLPTLKSMDPDNVVYLGSFSKTFAPGFRIGWVLSPSFVRDKLVLAQESATLCPPVFSQ
FAVSSYLAHWDWRAQVDSFINMYRIRRDTMLASLAETMPEGTTWSHPSGGFFVWLTMPGAIDSAAMLPRAVTKFVAYTPG
TAFYADGRGQRNIRLSFCYPTPERIKVGVERLAGVMREELEIAETFGLADERRHSRDLGPGPNLA

Sequences:

>Translated_465_residues
MSSTNHITRQPVPPTDSVRVKAAVAAHEAADAATDRRVDTTFDKFHDRYSTRSLGLKTSPVRALFAVANRPEVVSLAGGM
PNIADLPLDVVSESLKELVDTRGTVVMQYGSGQGEPEMRKHICEVMAVEGLVADPDDVTVTCGSQQGLDLVTRIFCNPSD
VIMAESPAYVGALNTFASYQTEVIHVDMDDSGLVPESLREKVTAARQDGKSVKFLYTVPNYSNPSGISQSTERRREILAV
ADELDLLVVEDNPYGLLNLDGDPLPTLKSMDPDNVVYLGSFSKTFAPGFRIGWVLSPSFVRDKLVLAQESATLCPPVFSQ
FAVSSYLAHWDWRAQVDSFINMYRIRRDTMLASLAETMPEGTTWSHPSGGFFVWLTMPGAIDSAAMLPRAVTKFVAYTPG
TAFYADGRGQRNIRLSFCYPTPERIKVGVERLAGVMREELEIAETFGLADERRHSRDLGPGPNLA
>Mature_464_residues
SSTNHITRQPVPPTDSVRVKAAVAAHEAADAATDRRVDTTFDKFHDRYSTRSLGLKTSPVRALFAVANRPEVVSLAGGMP
NIADLPLDVVSESLKELVDTRGTVVMQYGSGQGEPEMRKHICEVMAVEGLVADPDDVTVTCGSQQGLDLVTRIFCNPSDV
IMAESPAYVGALNTFASYQTEVIHVDMDDSGLVPESLREKVTAARQDGKSVKFLYTVPNYSNPSGISQSTERRREILAVA
DELDLLVVEDNPYGLLNLDGDPLPTLKSMDPDNVVYLGSFSKTFAPGFRIGWVLSPSFVRDKLVLAQESATLCPPVFSQF
AVSSYLAHWDWRAQVDSFINMYRIRRDTMLASLAETMPEGTTWSHPSGGFFVWLTMPGAIDSAAMLPRAVTKFVAYTPGT
AFYADGRGQRNIRLSFCYPTPERIKVGVERLAGVMREELEIAETFGLADERRHSRDLGPGPNLA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=412, Percent_Identity=31.7961165048544, Blast_Score=206, Evalue=5e-53,
Organism=Homo sapiens, GI33469970, Length=412, Percent_Identity=31.7961165048544, Blast_Score=206, Evalue=5e-53,
Organism=Escherichia coli, GI1787710, Length=371, Percent_Identity=25.3369272237197, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI1790797, Length=371, Percent_Identity=24.5283018867925, Blast_Score=142, Evalue=5e-35,
Organism=Saccharomyces cerevisiae, GI6321236, Length=492, Percent_Identity=22.5609756097561, Blast_Score=134, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6321000, Length=267, Percent_Identity=25.4681647940075, Blast_Score=85, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6321929, Length=409, Percent_Identity=23.960880195599, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21356535, Length=357, Percent_Identity=26.890756302521, Blast_Score=130, Evalue=2e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 50962; Mature: 50831

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTNHITRQPVPPTDSVRVKAAVAAHEAADAATDRRVDTTFDKFHDRYSTRSLGLKTSP
CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
VRALFAVANRPEVVSLAGGMPNIADLPLDVVSESLKELVDTRGTVVMQYGSGQGEPEMRK
HHHHHHHCCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
HICEVMAVEGLVADPDDVTVTCGSQQGLDLVTRIFCNPSDVIMAESPAYVGALNTFASYQ
HHHHHHHHCCCEECCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCC
TEVIHVDMDDSGLVPESLREKVTAARQDGKSVKFLYTVPNYSNPSGISQSTERRREILAV
EEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHE
ADELDLLVVEDNPYGLLNLDGDPLPTLKSMDPDNVVYLGSFSKTFAPGFRIGWVLSPSFV
ECCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCHHCCCCCEEEEEECCHHH
RDKLVLAQESATLCPPVFSQFAVSSYLAHWDWRAQVDSFINMYRIRRDTMLASLAETMPE
HHHHEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTTWSHPSGGFFVWLTMPGAIDSAAMLPRAVTKFVAYTPGTAFYADGRGQRNIRLSFCYP
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEECCCCEEEECCCCCCEEEEEEECC
TPERIKVGVERLAGVMREELEIAETFGLADERRHSRDLGPGPNLA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SSTNHITRQPVPPTDSVRVKAAVAAHEAADAATDRRVDTTFDKFHDRYSTRSLGLKTSP
CCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
VRALFAVANRPEVVSLAGGMPNIADLPLDVVSESLKELVDTRGTVVMQYGSGQGEPEMRK
HHHHHHHCCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH
HICEVMAVEGLVADPDDVTVTCGSQQGLDLVTRIFCNPSDVIMAESPAYVGALNTFASYQ
HHHHHHHHCCCEECCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCC
TEVIHVDMDDSGLVPESLREKVTAARQDGKSVKFLYTVPNYSNPSGISQSTERRREILAV
EEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHE
ADELDLLVVEDNPYGLLNLDGDPLPTLKSMDPDNVVYLGSFSKTFAPGFRIGWVLSPSFV
ECCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCHHCCCCCEEEEEECCHHH
RDKLVLAQESATLCPPVFSQFAVSSYLAHWDWRAQVDSFINMYRIRRDTMLASLAETMPE
HHHHEEECCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GTTWSHPSGGFFVWLTMPGAIDSAAMLPRAVTKFVAYTPGTAFYADGRGQRNIRLSFCYP
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEECCCCEEEECCCCCCEEEEEEECC
TPERIKVGVERLAGVMREELEIAETFGLADERRHSRDLGPGPNLA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]