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The map label for this gene is ygbI [H]

Identifier: 50843761

GI number: 50843761

Start: 2527000

End: 2527806

Strand: Reverse

Name: ygbI [H]

Synonym: PPA2326

Alternate gene names: 50843761

Gene position: 2527806-2527000 (Counterclockwise)

Preceding gene: 50843762

Following gene: 50843760

Centisome position: 98.73

GC content: 62.45

Gene sequence:

>807_bases
GTGAGCAAGAAGGAAGGTGCCCCCCGAGGTGGGCCTCGGGCGCGTCAGTTCGCCATCGCGGAAGCGGTCGTCCGGGCCGG
GTCGGTGAGCGTCGAGGACCTCGTCGAGTCAACCGGCGTCTCCGCTATGACGATCTACCGTGACCTGGCAATCCTCGAAA
GCAGCGGCGTGCTGCAACGTCACCGGGGGCGAGTTGTGGCCGTGGCTAACGGTCTGCACGAGGCCGATGCTGCTTTCCGT
CTGGAGCAGAGCTCTTCCGATAAGCAGGCCGTCGCCGAGCTGGCGAGCGACCTCATCGCTCCAGGCAGCTCGATCATGCT
CGATGACTCCACTTCCGGGGTGTGGGTCTTGCGTTCCCTACCTGAGCACACCCCTTTGACGGTGGTGACGAACTCCCTGC
TAGTTGCCAAGGAGGTCATCACGACCAGCTCTGACAAGCTCGTCGTCACCGGAGGCGAGTATCAGTCTTGGGCGCAGTCC
CTCATGGGACCCGCCGCCGTGCGCATGATCCGCAGCATGCACGCTGACCTGTGCTTCCTGTCGGCGTCGGGGATCTTCGA
GGCAGGTTGCTATCACCCGTACCAAGAGGTTGTCGAGGTGAAACGGGCCATGCTGGAATCAGCCGAGACACGCGTCCTGC
TGCTCGACCACACCAAGTTTGGACGCCGTGCTCTGTTCAAGTTCGCAGATCTCACTGAGTTCGACCATGTCGTCGTCGAC
GCACACACTCCGCGCGGGATCCTCAGTCAGCTTAGCGATCTGGGTGTCCACCTCATGGTGGTCGAGACGTCTGCATCGAG
ATCCTGA

Upstream 100 bases:

>100_bases
GCATCTAAAACCCTGCGGCCTCCACGTTCGGATCCCTGTCACTAGGATCGGTTCCGGGATGGCGGGCTATTACCGGCCGC
CGTGACGACGGGAGAAGTGG

Downstream 100 bases:

>100_bases
CCCGAACGGACGCAAGATCGGTTTAGGCCCTTGATCTGACGTCTGGATGGTATGACTCCCGATGACATGGTCGTCGTCGA
CAGTGAGGGCAAGATCATCG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSKKEGAPRGGPRARQFAIAEAVVRAGSVSVEDLVESTGVSAMTIYRDLAILESSGVLQRHRGRVVAVANGLHEADAAFR
LEQSSSDKQAVAELASDLIAPGSSIMLDDSTSGVWVLRSLPEHTPLTVVTNSLLVAKEVITTSSDKLVVTGGEYQSWAQS
LMGPAAVRMIRSMHADLCFLSASGIFEAGCYHPYQEVVEVKRAMLESAETRVLLLDHTKFGRRALFKFADLTEFDHVVVD
AHTPRGILSQLSDLGVHLMVVETSASRS

Sequences:

>Translated_268_residues
MSKKEGAPRGGPRARQFAIAEAVVRAGSVSVEDLVESTGVSAMTIYRDLAILESSGVLQRHRGRVVAVANGLHEADAAFR
LEQSSSDKQAVAELASDLIAPGSSIMLDDSTSGVWVLRSLPEHTPLTVVTNSLLVAKEVITTSSDKLVVTGGEYQSWAQS
LMGPAAVRMIRSMHADLCFLSASGIFEAGCYHPYQEVVEVKRAMLESAETRVLLLDHTKFGRRALFKFADLTEFDHVVVD
AHTPRGILSQLSDLGVHLMVVETSASRS
>Mature_267_residues
SKKEGAPRGGPRARQFAIAEAVVRAGSVSVEDLVESTGVSAMTIYRDLAILESSGVLQRHRGRVVAVANGLHEADAAFRL
EQSSSDKQAVAELASDLIAPGSSIMLDDSTSGVWVLRSLPEHTPLTVVTNSLLVAKEVITTSSDKLVVTGGEYQSWAQSL
MGPAAVRMIRSMHADLCFLSASGIFEAGCYHPYQEVVEVKRAMLESAETRVLLLDHTKFGRRALFKFADLTEFDHVVVDA
HTPRGILSQLSDLGVHLMVVETSASRS

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=233, Percent_Identity=34.7639484978541, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789519, Length=254, Percent_Identity=29.9212598425197, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=31.2, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787540, Length=251, Percent_Identity=29.0836653386454, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1789059, Length=252, Percent_Identity=27.7777777777778, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788069, Length=225, Percent_Identity=31.1111111111111, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI87082344, Length=260, Percent_Identity=26.5384615384615, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790635, Length=256, Percent_Identity=26.5625, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789170, Length=230, Percent_Identity=28.2608695652174, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787063, Length=228, Percent_Identity=27.1929824561404, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28861; Mature: 28730

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKEGAPRGGPRARQFAIAEAVVRAGSVSVEDLVESTGVSAMTIYRDLAILESSGVLQR
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHH
HRGRVVAVANGLHEADAAFRLEQSSSDKQAVAELASDLIAPGSSIMLDDSTSGVWVLRSL
HCCCEEEEECCCHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECC
PEHTPLTVVTNSLLVAKEVITTSSDKLVVTGGEYQSWAQSLMGPAAVRMIRSMHADLCFL
CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHEEEE
SASGIFEAGCYHPYQEVVEVKRAMLESAETRVLLLDHTKFGRRALFKFADLTEFDHVVVD
ECCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEE
AHTPRGILSQLSDLGVHLMVVETSASRS
CCCCHHHHHHHHHCCEEEEEEECCCCCC
>Mature Secondary Structure 
SKKEGAPRGGPRARQFAIAEAVVRAGSVSVEDLVESTGVSAMTIYRDLAILESSGVLQR
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHH
HRGRVVAVANGLHEADAAFRLEQSSSDKQAVAELASDLIAPGSSIMLDDSTSGVWVLRSL
HCCCEEEEECCCHHHHHHEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECC
PEHTPLTVVTNSLLVAKEVITTSSDKLVVTGGEYQSWAQSLMGPAAVRMIRSMHADLCFL
CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHEEEE
SASGIFEAGCYHPYQEVVEVKRAMLESAETRVLLLDHTKFGRRALFKFADLTEFDHVVVD
ECCCCHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEE
AHTPRGILSQLSDLGVHLMVVETSASRS
CCCCHHHHHHHHHCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]