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The map label for this gene is araD [H]

Identifier: 50843760

GI number: 50843760

Start: 2526430

End: 2526948

Strand: Reverse

Name: araD [H]

Synonym: PPA2325

Alternate gene names: 50843760

Gene position: 2526948-2526430 (Counterclockwise)

Preceding gene: 50843761

Following gene: 50843759

Centisome position: 98.7

GC content: 60.89

Gene sequence:

>519_bases
ATGACTCCCGATGACATGGTCGTCGTCGACAGTGAGGGCAAGATCATCGAAGGGGACCGGGGACCGTCCTCGGACACGGC
CTCTCACCTTTATGTGTATCGCCGGCGTGATGACATTCGCAGCATCGTCCACACTCACTCCACCTTTGCTACCGCGTGGG
CCGCCACCGGTCAGGACATCCCGTATTCCCTGGCGGCCGTTGCTGACGAGTTCGGTGGGCCCGTACCTTGTGCTGGTTAT
GCCCACATTGGCACCGAGCAGATCGGGGAGCAGGTCATGAGGTTCATCGACCAGTGCCCGGCAGTGCTTTTGAGGAAGCA
CGGTGTCTTTACCGTCGGGGCCTCCATCGAGAAAGCCCTCAAGGCGGCCGTCATGGTGGAGGACGTCGCACGAACTCTGG
CCTACGCGACGATGATCGGTGACATTTCGTCGCTGCCGCAGTCTGAGATCGACGCCAACCATGATCGCTACATCAACCGT
TACGGCACAGCGACTGCGTCCACCGGGGTGACCTCCTGA

Upstream 100 bases:

>100_bases
TCTGGGTGTCCACCTCATGGTGGTCGAGACGTCTGCATCGAGATCCTGACCCGAACGGACGCAAGATCGGTTTAGGCCCT
TGATCTGACGTCTGGATGGT

Downstream 100 bases:

>100_bases
TCGCCTCAGTCGCGATTCCTTATGGTCGAAGTGTCACAGCGCCAAGGGTTGCGAGGAGGATCCTTCGCGCGTCACGGATA
GGTGCAAGGTGGCACAATTC

Product: L-ribulose-5-phosphate 4-epimerase

Products: NA

Alternate protein names: Phosphoribulose isomerase [H]

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MTPDDMVVVDSEGKIIEGDRGPSSDTASHLYVYRRRDDIRSIVHTHSTFATAWAATGQDIPYSLAAVADEFGGPVPCAGY
AHIGTEQIGEQVMRFIDQCPAVLLRKHGVFTVGASIEKALKAAVMVEDVARTLAYATMIGDISSLPQSEIDANHDRYINR
YGTATASTGVTS

Sequences:

>Translated_172_residues
MTPDDMVVVDSEGKIIEGDRGPSSDTASHLYVYRRRDDIRSIVHTHSTFATAWAATGQDIPYSLAAVADEFGGPVPCAGY
AHIGTEQIGEQVMRFIDQCPAVLLRKHGVFTVGASIEKALKAAVMVEDVARTLAYATMIGDISSLPQSEIDANHDRYINR
YGTATASTGVTS
>Mature_171_residues
TPDDMVVVDSEGKIIEGDRGPSSDTASHLYVYRRRDDIRSIVHTHSTFATAWAATGQDIPYSLAAVADEFGGPVPCAGYA
HIGTEQIGEQVMRFIDQCPAVLLRKHGVFTVGASIEKALKAAVMVEDVARTLAYATMIGDISSLPQSEIDANHDRYINRY
GTATASTGVTS

Specific function: Probable Pentulose-5-Phosphate-4-Epimerase. [C]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. AraD/FucA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790008, Length=176, Percent_Identity=36.9318181818182, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1790642, Length=142, Percent_Identity=39.4366197183099, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786247, Length=177, Percent_Identity=35.0282485875706, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1789164, Length=141, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR004661 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =5.1.3.4 [H]

Molecular weight: Translated: 18477; Mature: 18346

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPDDMVVVDSEGKIIEGDRGPSSDTASHLYVYRRRDDIRSIVHTHSTFATAWAATGQDI
CCCCCEEEECCCCCEEECCCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC
PYSLAAVADEFGGPVPCAGYAHIGTEQIGEQVMRFIDQCPAVLLRKHGVFTVGASIEKAL
CHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHH
KAAVMVEDVARTLAYATMIGDISSLPQSEIDANHDRYINRYGTATASTGVTS
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TPDDMVVVDSEGKIIEGDRGPSSDTASHLYVYRRRDDIRSIVHTHSTFATAWAATGQDI
CCCCEEEECCCCCEEECCCCCCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC
PYSLAAVADEFGGPVPCAGYAHIGTEQIGEQVMRFIDQCPAVLLRKHGVFTVGASIEKAL
CHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHH
KAAVMVEDVARTLAYATMIGDISSLPQSEIDANHDRYINRYGTATASTGVTS
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA