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The map label for this gene is abfA [H]

Identifier: 50843745

GI number: 50843745

Start: 2507691

End: 2508362

Strand: Reverse

Name: abfA [H]

Synonym: PPA2308

Alternate gene names: 50843745

Gene position: 2508362-2507691 (Counterclockwise)

Preceding gene: 50843747

Following gene: 50843744

Centisome position: 97.97

GC content: 59.67

Gene sequence:

>672_bases
ATGGGGACGTCGATTCCTGGTTGGTCCGCCCCCGATTGCCGCAATTCGATGGCAGCCGATCTTGATGAGGTGCTCTACCC
GTGCACGAGTGTCAGGGTGTACGTGGGGACTCTCATGTACAACGTTAGAAACAGTGTTGACGGGCACCCCGGCTGCTTTG
GCAACATCCACAAGGCGCGCTGTCATGGCCAGGATCTTATGATCTCCAACGGGGGTTCAGCAATGTCAGGGGAACGACTT
GTGAGGGCTTTGCACCTCTCTTTATATCGTTGTTATAACCTATGGCAACGTTGCAAGAAGCTACGGTTGGGAGGATCCCT
GGCGCGTCAGCAATGGGGCCTCGGCAATGAGATGGACGGGCCGTGGCAGATGGGCCACAAGACACCTGAGGAATACGCCC
GGGCCGTGACCGAGGTGGCCAACACCTTCCACCGCTTCGACGACAATCCCATTGTGGCTACCTGTGGTTCCTCGGGACGC
TCCATGCCCATCTTCGGGCGCCGGGAGCGCGTCGTCGCCGATGCCGCATTCGACAGCCTGGACCTGGTGTCGGCCACGCC
CACTACGAATCCGATCGACGATGATTTCATCCGTCTCGGCGTGGTTGCTGTCGGCAGGACCCGCATCGTCGTGCACCGGG
ATTCGGACCCCCGGACTAATCTCTCCTGTTAG

Upstream 100 bases:

>100_bases
TCAACCTATTTAGCGCATGAAGCTGTTACGGCATTCCCGGAGGGTTTTACGCCCGGCGTGGGGCTTCCAGTGCTCTCCCC
CCATGACGAGGTGCCACGGT

Downstream 100 bases:

>100_bases
TTACCTGACCATGGTCGGATGGGGTTGGCCGGTCGCGTGCCACTACAGCGTCGTTCCCTCTCCGCCGACAGCATGTTTCC
CTCGGCGATCGGGTGAACAC

Product: alpha-L-arabinofuranosidase

Products: NA

Alternate protein names: Arabinosidase [H]

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MGTSIPGWSAPDCRNSMAADLDEVLYPCTSVRVYVGTLMYNVRNSVDGHPGCFGNIHKARCHGQDLMISNGGSAMSGERL
VRALHLSLYRCYNLWQRCKKLRLGGSLARQQWGLGNEMDGPWQMGHKTPEEYARAVTEVANTFHRFDDNPIVATCGSSGR
SMPIFGRRERVVADAAFDSLDLVSATPTTNPIDDDFIRLGVVAVGRTRIVVHRDSDPRTNLSC

Sequences:

>Translated_223_residues
MGTSIPGWSAPDCRNSMAADLDEVLYPCTSVRVYVGTLMYNVRNSVDGHPGCFGNIHKARCHGQDLMISNGGSAMSGERL
VRALHLSLYRCYNLWQRCKKLRLGGSLARQQWGLGNEMDGPWQMGHKTPEEYARAVTEVANTFHRFDDNPIVATCGSSGR
SMPIFGRRERVVADAAFDSLDLVSATPTTNPIDDDFIRLGVVAVGRTRIVVHRDSDPRTNLSC
>Mature_222_residues
GTSIPGWSAPDCRNSMAADLDEVLYPCTSVRVYVGTLMYNVRNSVDGHPGCFGNIHKARCHGQDLMISNGGSAMSGERLV
RALHLSLYRCYNLWQRCKKLRLGGSLARQQWGLGNEMDGPWQMGHKTPEEYARAVTEVANTFHRFDDNPIVATCGSSGRS
MPIFGRRERVVADAAFDSLDLVSATPTTNPIDDDFIRLGVVAVGRTRIVVHRDSDPRTNLSC

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 24604; Mature: 24473

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTSIPGWSAPDCRNSMAADLDEVLYPCTSVRVYVGTLMYNVRNSVDGHPGCFGNIHKAR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
CHGQDLMISNGGSAMSGERLVRALHLSLYRCYNLWQRCKKLRLGGSLARQQWGLGNEMDG
HCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCC
PWQMGHKTPEEYARAVTEVANTFHRFDDNPIVATCGSSGRSMPIFGRRERVVADAAFDSL
CHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCC
DLVSATPTTNPIDDDFIRLGVVAVGRTRIVVHRDSDPRTNLSC
CEEECCCCCCCCCHHHHHHHHEEECCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
GTSIPGWSAPDCRNSMAADLDEVLYPCTSVRVYVGTLMYNVRNSVDGHPGCFGNIHKAR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
CHGQDLMISNGGSAMSGERLVRALHLSLYRCYNLWQRCKKLRLGGSLARQQWGLGNEMDG
HCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCC
PWQMGHKTPEEYARAVTEVANTFHRFDDNPIVATCGSSGRSMPIFGRRERVVADAAFDSL
CHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCC
DLVSATPTTNPIDDDFIRLGVVAVGRTRIVVHRDSDPRTNLSC
CEEECCCCCCCCCHHHHHHHHEEECCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7887599 [H]