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The map label for this gene is deoR [H]

Identifier: 50843743

GI number: 50843743

Start: 2505130

End: 2506077

Strand: Direct

Name: deoR [H]

Synonym: PPA2306

Alternate gene names: 50843743

Gene position: 2505130-2506077 (Clockwise)

Preceding gene: 50843740

Following gene: 50843746

Centisome position: 97.85

GC content: 56.96

Gene sequence:

>948_bases
ATGAACGAATTGTCCAATGATGTATGGACAGCTGCGTCCATGTATTACATGCAGGGCGAGACAATGGATGCCATCGCCAG
CCATCTCGGTACATCTCGCTCGACCGTATCTCGACTTCTCAAGCAGGCACGTCTGTCCGGAGTTGTGCGCATCACTTTGT
CCGAGCCAACGGGGCTACGAAGTGGACTGGATTCCACCCTGACGAGGATGTTCGGGGTAAATACCACGGTTGTGCCCGTG
AAATCAGGAACCACCGAGATCCACCGCCTCGATCAAGTCGCCAGGATCGCGGGACAGATGGTGACAGATATGGTCGAGGA
CAATTCCGCCGTCGGTATCGCCTGGGGCACAACCCTTGATGCCATCACCCACTACGTAGTGCCTAAAGACGTCAAAGGGG
TCAGCGTCGTCCAGATGAATGGGTCGGCAAACCCCGCTAGTTCGGGAATCCCCTACGTCGGATCGATCCTGTCAAGAATG
GCTGCTGCATTTGGTGGCGAGGTTATCCATTTCCCGGTCCCAACCTTCTTCGACAGTGCGTCAACAAAGGCCGCAATGTG
GCAAGAACGTTCCGTTCAGGCCGTCCTTAAAGCACATCGAGAGCTCGATCTTGCTGTTTTTAGCGTCGGAGCCCTTGACA
GCCCGGTCCCCTCCCACGTCTATTCAGCGGGTTACATGACCGATGAGGAAAAGGCGAATTTGGTACATGCTGGAGTCGTC
GGTGACGTCAACACCGTCTTCCTCAAGGCTGACGGTGCTTACGACGTCGAGTTCAACAAGAGAGCAACCGGATTAGCCCC
CTTCCAATTACAGCGCATACCGCGTCGGCTCTGCGTCGTCGCTGGGCGCGCCAAGGCCGTCGGACTGCTGGCTGCCCTGC
GCGCCAGAGTTGCAACTGACCTCGTCGTTGATGACGCCACTGCCCGAGCGGTCCTCGACCTCATGTGA

Upstream 100 bases:

>100_bases
CGTCCCGCCCCCCATCGGGGTCGGACGTAGCTCACAGTCAAACATCAAGGGCCCCACGGATTCGCGATTCTGCACTCATG
TGCATGGCAAGGGGGGAGGC

Downstream 100 bases:

>100_bases
GAGCGCAGGTAGAAATTCGAACTCTCCGCAGCACATCGGCTGCGGAGAGTTGGCTGTGTTACTGCCAAAATCAAGCCTTC
GCCGTGCCCATTGTCACGTC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MNELSNDVWTAASMYYMQGETMDAIASHLGTSRSTVSRLLKQARLSGVVRITLSEPTGLRSGLDSTLTRMFGVNTTVVPV
KSGTTEIHRLDQVARIAGQMVTDMVEDNSAVGIAWGTTLDAITHYVVPKDVKGVSVVQMNGSANPASSGIPYVGSILSRM
AAAFGGEVIHFPVPTFFDSASTKAAMWQERSVQAVLKAHRELDLAVFSVGALDSPVPSHVYSAGYMTDEEKANLVHAGVV
GDVNTVFLKADGAYDVEFNKRATGLAPFQLQRIPRRLCVVAGRAKAVGLLAALRARVATDLVVDDATARAVLDLM

Sequences:

>Translated_315_residues
MNELSNDVWTAASMYYMQGETMDAIASHLGTSRSTVSRLLKQARLSGVVRITLSEPTGLRSGLDSTLTRMFGVNTTVVPV
KSGTTEIHRLDQVARIAGQMVTDMVEDNSAVGIAWGTTLDAITHYVVPKDVKGVSVVQMNGSANPASSGIPYVGSILSRM
AAAFGGEVIHFPVPTFFDSASTKAAMWQERSVQAVLKAHRELDLAVFSVGALDSPVPSHVYSAGYMTDEEKANLVHAGVV
GDVNTVFLKADGAYDVEFNKRATGLAPFQLQRIPRRLCVVAGRAKAVGLLAALRARVATDLVVDDATARAVLDLM
>Mature_315_residues
MNELSNDVWTAASMYYMQGETMDAIASHLGTSRSTVSRLLKQARLSGVVRITLSEPTGLRSGLDSTLTRMFGVNTTVVPV
KSGTTEIHRLDQVARIAGQMVTDMVEDNSAVGIAWGTTLDAITHYVVPKDVKGVSVVQMNGSANPASSGIPYVGSILSRM
AAAFGGEVIHFPVPTFFDSASTKAAMWQERSVQAVLKAHRELDLAVFSVGALDSPVPSHVYSAGYMTDEEKANLVHAGVV
GDVNTVFLKADGAYDVEFNKRATGLAPFQLQRIPRRLCVVAGRAKAVGLLAALRARVATDLVVDDATARAVLDLM

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=320, Percent_Identity=28.125, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787791, Length=308, Percent_Identity=25.3246753246753, Blast_Score=89, Evalue=5e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 33582; Mature: 33582

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELSNDVWTAASMYYMQGETMDAIASHLGTSRSTVSRLLKQARLSGVVRITLSEPTGLR
CCCCHHHHHHHHHEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCHH
SGLDSTLTRMFGVNTTVVPVKSGTTEIHRLDQVARIAGQMVTDMVEDNSAVGIAWGTTLD
HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
AITHYVVPKDVKGVSVVQMNGSANPASSGIPYVGSILSRMAAAFGGEVIHFPVPTFFDSA
HHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHCCC
STKAAMWQERSVQAVLKAHRELDLAVFSVGALDSPVPSHVYSAGYMTDEEKANLVHAGVV
CCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHCCCCCCCHHCCEEEECEE
GDVNTVFLKADGAYDVEFNKRATGLAPFQLQRIPRRLCVVAGRAKAVGLLAALRARVATD
CCCEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LVVDDATARAVLDLM
HHCCCHHHHHHHHCC
>Mature Secondary Structure
MNELSNDVWTAASMYYMQGETMDAIASHLGTSRSTVSRLLKQARLSGVVRITLSEPTGLR
CCCCHHHHHHHHHEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCHH
SGLDSTLTRMFGVNTTVVPVKSGTTEIHRLDQVARIAGQMVTDMVEDNSAVGIAWGTTLD
HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH
AITHYVVPKDVKGVSVVQMNGSANPASSGIPYVGSILSRMAAAFGGEVIHFPVPTFFDSA
HHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHCCC
STKAAMWQERSVQAVLKAHRELDLAVFSVGALDSPVPSHVYSAGYMTDEEKANLVHAGVV
CCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHCCCCCCCHHCCEEEECEE
GDVNTVFLKADGAYDVEFNKRATGLAPFQLQRIPRRLCVVAGRAKAVGLLAALRARVATD
CCCEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LVVDDATARAVLDLM
HHCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]