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The map label for this gene is araQ [H]

Identifier: 50843730

GI number: 50843730

Start: 2488614

End: 2489525

Strand: Reverse

Name: araQ [H]

Synonym: PPA2293

Alternate gene names: 50843730

Gene position: 2489525-2488614 (Counterclockwise)

Preceding gene: 50843731

Following gene: 50843728

Centisome position: 97.24

GC content: 56.47

Gene sequence:

>912_bases
ATGGCACACGGCAAGACCGCCGTCACCAAGGATGGCATCCCTTACCGCCCCTCATTGGATGGTCTCCCGCCTCGATCGAT
TGCCCCCTCCAAGGCGGCCCGGACAATCACATGGGTGATCTTGGCCGTTGTAGCTTGCTACTTTTTGCTGCCTATCATCT
GGCTGGTCATCGCGTCTACCAAGAACAACACCGATCTGGTGAGCACTTCTGGGTTCGCCTTCGGCGAGTTCAACTGGGCC
GCCAACTGGCACTCTCTCATGGCCTGGACCAAGGGGATGTTTCCGAGATGGGTGCTCAACTCATTGCTGTACTCAACGGT
GTCTGGAGTCGTTGGGACGCTTATTTCTGTCTCCTGTGGATATGTGATATCAAAATTCCGGTTCCCGGGGCGCCGAGTGC
TGCTCGTCGTCATCATGGTTGGCCTGCTCATGCCGGTGGCGTTGCTTACCGTTCCGTTGTACTTGCTATTTATCAAGATG
CACCTGGTCAACACCATGTGGGCAATGATCATCCCATCGATGGTCAGCCCGTTTGGGGTGTTCCTCGGCAATGTCTACGC
CGATTCGTCGGTGCCAATGGAGCTCCTCGAAGCCGCCCGTATTGACGGGGCGGGAGAGCTCCGGATCTTCTCCACTATGG
TGCTGCGTCTGCTGGCCCCGGCCATGGTGACGATCTTTCTGTTCATTTTTGTTGCGACGTGGAACAACTTCTTGCTACCG
CTGATGATGATCACTGATGAGAACTTGCAGCCGGTGACTCAGGGACTGTACGGCATGATGGCCTATTTCGCTCCGGACAA
GGGCGCCGTGATGCTCGCTTCCGTCATCGGAGTGGTCCCATTGGTGATTTTGTTCCTCGTCCTCCAGCGTTACTGGCAGT
CCGGACTTGCTGCTGGAGCTGTCAAGGGGTGA

Upstream 100 bases:

>100_bases
AGCGGGGCCGGTCCGGCCTCGGCGGTGTCCATCATGATGGCTTTGGTCGCCGGGGTGCTCGCAATGATCTACGCCCTGGT
CCAGAGGAAGGCGGACTGAC

Downstream 100 bases:

>100_bases
TGCCCCACACATCAGGTGTGCATGGACTCACGCTACGTAGGTCCTTGTCGGGGCGGGTTTCCCCATTTTCGGTGGTCGCG
CTCGGTGTGCAATTCCGACG

Product: binding-protein-dependent transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MAHGKTAVTKDGIPYRPSLDGLPPRSIAPSKAARTITWVILAVVACYFLLPIIWLVIASTKNNTDLVSTSGFAFGEFNWA
ANWHSLMAWTKGMFPRWVLNSLLYSTVSGVVGTLISVSCGYVISKFRFPGRRVLLVVIMVGLLMPVALLTVPLYLLFIKM
HLVNTMWAMIIPSMVSPFGVFLGNVYADSSVPMELLEAARIDGAGELRIFSTMVLRLLAPAMVTIFLFIFVATWNNFLLP
LMMITDENLQPVTQGLYGMMAYFAPDKGAVMLASVIGVVPLVILFLVLQRYWQSGLAAGAVKG

Sequences:

>Translated_303_residues
MAHGKTAVTKDGIPYRPSLDGLPPRSIAPSKAARTITWVILAVVACYFLLPIIWLVIASTKNNTDLVSTSGFAFGEFNWA
ANWHSLMAWTKGMFPRWVLNSLLYSTVSGVVGTLISVSCGYVISKFRFPGRRVLLVVIMVGLLMPVALLTVPLYLLFIKM
HLVNTMWAMIIPSMVSPFGVFLGNVYADSSVPMELLEAARIDGAGELRIFSTMVLRLLAPAMVTIFLFIFVATWNNFLLP
LMMITDENLQPVTQGLYGMMAYFAPDKGAVMLASVIGVVPLVILFLVLQRYWQSGLAAGAVKG
>Mature_302_residues
AHGKTAVTKDGIPYRPSLDGLPPRSIAPSKAARTITWVILAVVACYFLLPIIWLVIASTKNNTDLVSTSGFAFGEFNWAA
NWHSLMAWTKGMFPRWVLNSLLYSTVSGVVGTLISVSCGYVISKFRFPGRRVLLVVIMVGLLMPVALLTVPLYLLFIKMH
LVNTMWAMIIPSMVSPFGVFLGNVYADSSVPMELLEAARIDGAGELRIFSTMVLRLLAPAMVTIFLFIFVATWNNFLLPL
MMITDENLQPVTQGLYGMMAYFAPDKGAVMLASVIGVVPLVILFLVLQRYWQSGLAAGAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=223, Percent_Identity=30.0448430493274, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787571, Length=189, Percent_Identity=30.1587301587302, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790464, Length=224, Percent_Identity=27.2321428571429, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33216; Mature: 33085

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHGKTAVTKDGIPYRPSLDGLPPRSIAPSKAARTITWVILAVVACYFLLPIIWLVIAST
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KNNTDLVSTSGFAFGEFNWAANWHSLMAWTKGMFPRWVLNSLLYSTVSGVVGTLISVSCG
CCCCCEEECCCCEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YVISKFRFPGRRVLLVVIMVGLLMPVALLTVPLYLLFIKMHLVNTMWAMIIPSMVSPFGV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGNVYADSSVPMELLEAARIDGAGELRIFSTMVLRLLAPAMVTIFLFIFVATWNNFLLP
HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMMITDENLQPVTQGLYGMMAYFAPDKGAVMLASVIGVVPLVILFLVLQRYWQSGLAAGA
HHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
VKG
CCC
>Mature Secondary Structure 
AHGKTAVTKDGIPYRPSLDGLPPRSIAPSKAARTITWVILAVVACYFLLPIIWLVIAST
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC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CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]