Click here to switch to the map view.

The map label for this gene is 50843690

Identifier: 50843690

GI number: 50843690

Start: 2441486

End: 2442670

Strand: Direct

Name: 50843690

Synonym: PPA2257

Alternate gene names: NA

Gene position: 2441486-2442670 (Clockwise)

Preceding gene: 50843687

Following gene: 50843691

Centisome position: 95.36

GC content: 60.34

Gene sequence:

>1185_bases
ATGACGAGATTTCTCCACACCTCAGATTGGCAACTGGGGATGACTCGGCACTACCTGTCGAAGCGCGGCGACGACGACCC
ACAGGCACGGTTTACTGCCGATCGAATCGAGACGGTACGCAGGCTAGGCGACGTTGCCCGGCAAGAGGGCTGCGAGTTTG
TCGTCGTCGCCGGAGATGTCTTCGAAACCCACAATGTCTCCACTCAGATCATTGCCCGCGCGTGTGAGGCGATAGCCTCC
ATTGATCTCCCCGTGTACCTGCTGCCCGGAAATCACGACAGCTTAGAGCCGGGGTGTCTCTGGGATGGGCCAGAATTCGC
ACAGCGCTGCCCGAGCAACGTCCAGGTGCTACGAGACCACGCAGAGACCCAGATCGCTGACGGCAACGGGGTCGTCATCG
CTACGATCGTTGCCTCTCCGCTGACGACCCGCCACCCGTCAACTGACCCCCTCGCCGACCTTGTGAAGAACCTGGAGCCC
GCCCAGACACCACGCATCCTGGTCGGCCATGGCCAGCTTGAGGGGCTATCGGGGGATGCTCGTGAAGCCCTCATCTCGCG
AGCTCCTCTCGAGGACGCGATTGCCCGAGGTGCGCTGAGCTACGTCGCTTTGGGCGATCGTCATATCGCGTGGCCGACCA
ACGATAACCGCGCCGCCATCCGGTACAGCGGAACCCAGGAGACAACGAGCTTCAACGAGGAGAGCGTCGGCACTGCGGTA
ATCGTCGACCTCGGTGATCCTCTTACCTGCCAGACGATCAATGTTGGCACGTGGCTGCATGCCCGAGTGAGTCAGGAGGT
AGCCAGCGAGGCAGATCTACAGGCTCTGCGCGATAGGTTCGACTCCTTCAACCGCCGAGATCGCACCATCATCCGCTACG
ACCTTCACGGACAGGTCACTATCTCTCAGAAGGCAAAGCTCGACGAGATCATCGCTGATTATGAAACTGTCTTCGCAAGC
CTCGAACCGAGTGAAACCCGCCATGACCTCACCGTGGTGGGAGACGATATCAGCCTGACTGAGGCTGATGTGCCCGGTTG
GGTACGAGATGCTGCCGAAGAATTGTCGGACATGTGCGCCACCAATGAAGACGCCGTCGCTGCGCTCACCCTGCTGCACC
GTCTCGTCAGCGCTGAAGGAGCCAGTATCGCATCTACTGCACACACTGCGGAGGTGTCACGATGA

Upstream 100 bases:

>100_bases
CTGAGCGTCGGATTATCGCTAAGACTGGCCCTGACAAGCCAGAACATTACCGGAACACGCGTACACAAATAGTATCGGAG
CCATTTCCTATCATGCTGCC

Downstream 100 bases:

>100_bases
AGCTGCACCGCATCCACGTCGAAAATTTCAAAGCGATTGACGAACGCACCCTCGAGTTGCCCGATTGTGGGGTTGTCATT
GCAACCGGACGCAACGAGAT

Product: putative DNA repair exonuclease or phosphoesterase

Products: NA

Alternate protein names: DNA Repair Exonuclease; Exonuclease; Exonuclease SbcD; Ser/Thr Protein Phosphatase Family Protein; Exonuclease SbcD Family Protein; Calcineurin-Like Phosphoesterase Family; DNA Repair Exonuclease Or Phosphoesterase; DNA Repair Exonuclease SbcD

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTRFLHTSDWQLGMTRHYLSKRGDDDPQARFTADRIETVRRLGDVARQEGCEFVVVAGDVFETHNVSTQIIARACEAIAS
IDLPVYLLPGNHDSLEPGCLWDGPEFAQRCPSNVQVLRDHAETQIADGNGVVIATIVASPLTTRHPSTDPLADLVKNLEP
AQTPRILVGHGQLEGLSGDAREALISRAPLEDAIARGALSYVALGDRHIAWPTNDNRAAIRYSGTQETTSFNEESVGTAV
IVDLGDPLTCQTINVGTWLHARVSQEVASEADLQALRDRFDSFNRRDRTIIRYDLHGQVTISQKAKLDEIIADYETVFAS
LEPSETRHDLTVVGDDISLTEADVPGWVRDAAEELSDMCATNEDAVAALTLLHRLVSAEGASIASTAHTAEVSR

Sequences:

>Translated_394_residues
MTRFLHTSDWQLGMTRHYLSKRGDDDPQARFTADRIETVRRLGDVARQEGCEFVVVAGDVFETHNVSTQIIARACEAIAS
IDLPVYLLPGNHDSLEPGCLWDGPEFAQRCPSNVQVLRDHAETQIADGNGVVIATIVASPLTTRHPSTDPLADLVKNLEP
AQTPRILVGHGQLEGLSGDAREALISRAPLEDAIARGALSYVALGDRHIAWPTNDNRAAIRYSGTQETTSFNEESVGTAV
IVDLGDPLTCQTINVGTWLHARVSQEVASEADLQALRDRFDSFNRRDRTIIRYDLHGQVTISQKAKLDEIIADYETVFAS
LEPSETRHDLTVVGDDISLTEADVPGWVRDAAEELSDMCATNEDAVAALTLLHRLVSAEGASIASTAHTAEVSR
>Mature_393_residues
TRFLHTSDWQLGMTRHYLSKRGDDDPQARFTADRIETVRRLGDVARQEGCEFVVVAGDVFETHNVSTQIIARACEAIASI
DLPVYLLPGNHDSLEPGCLWDGPEFAQRCPSNVQVLRDHAETQIADGNGVVIATIVASPLTTRHPSTDPLADLVKNLEPA
QTPRILVGHGQLEGLSGDAREALISRAPLEDAIARGALSYVALGDRHIAWPTNDNRAAIRYSGTQETTSFNEESVGTAVI
VDLGDPLTCQTINVGTWLHARVSQEVASEADLQALRDRFDSFNRRDRTIIRYDLHGQVTISQKAKLDEIIADYETVFASL
EPSETRHDLTVVGDDISLTEADVPGWVRDAAEELSDMCATNEDAVAALTLLHRLVSAEGASIASTAHTAEVSR

Specific function: Unknown

COG id: COG0420

COG function: function code L; DNA repair exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42979; Mature: 42848

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFLHTSDWQLGMTRHYLSKRGDDDPQARFTADRIETVRRLGDVARQEGCEFVVVAGDV
CCCCEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCE
FETHNVSTQIIARACEAIASIDLPVYLLPGNHDSLEPGCLWDGPEFAQRCPSNVQVLRDH
ECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHH
AETQIADGNGVVIATIVASPLTTRHPSTDPLADLVKNLEPAQTPRILVGHGQLEGLSGDA
HHHEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCHH
REALISRAPLEDAIARGALSYVALGDRHIAWPTNDNRAAIRYSGTQETTSFNEESVGTAV
HHHHHHHCCHHHHHHHHHHHEEEECCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEE
IVDLGDPLTCQTINVGTWLHARVSQEVASEADLQALRDRFDSFNRRDRTIIRYDLHGQVT
EEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEE
ISQKAKLDEIIADYETVFASLEPSETRHDLTVVGDDISLTEADVPGWVRDAAEELSDMCA
ECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHC
TNEDAVAALTLLHRLVSAEGASIASTAHTAEVSR
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TRFLHTSDWQLGMTRHYLSKRGDDDPQARFTADRIETVRRLGDVARQEGCEFVVVAGDV
CCCEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCE
FETHNVSTQIIARACEAIASIDLPVYLLPGNHDSLEPGCLWDGPEFAQRCPSNVQVLRDH
ECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHH
AETQIADGNGVVIATIVASPLTTRHPSTDPLADLVKNLEPAQTPRILVGHGQLEGLSGDA
HHHEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCCCHH
REALISRAPLEDAIARGALSYVALGDRHIAWPTNDNRAAIRYSGTQETTSFNEESVGTAV
HHHHHHHCCHHHHHHHHHHHEEEECCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCEEE
IVDLGDPLTCQTINVGTWLHARVSQEVASEADLQALRDRFDSFNRRDRTIIRYDLHGQVT
EEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEE
ISQKAKLDEIIADYETVFASLEPSETRHDLTVVGDDISLTEADVPGWVRDAAEELSDMCA
ECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHC
TNEDAVAALTLLHRLVSAEGASIASTAHTAEVSR
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA