Click here to switch to the map view.

The map label for this gene is ydiS [H]

Identifier: 50843647

GI number: 50843647

Start: 2396185

End: 2397534

Strand: Reverse

Name: ydiS [H]

Synonym: PPA2212

Alternate gene names: 50843647

Gene position: 2397534-2396185 (Counterclockwise)

Preceding gene: 50843648

Following gene: 50843646

Centisome position: 93.64

GC content: 56.0

Gene sequence:

>1350_bases
TTGCGGGGTGTGGGCTCCCAGCCTTCGGAGACACCGCCGCCGTTGTGGGATGTCCCGGGCGTTGAGCCTGATTTCGATGT
CATTGTCGTCGGGGGTGGTGTGGCTGGTGCCGTCGCGGCGTACGAGCTAGCTGGTGAGGGGCACGAAGTACTCCTTGTCG
AGCGTGGCCGAGAACCTGGAAGCAAAAATCTCTCAGGAGGTGTTCTTTACTGTCGGGTCCTTGAGGAGATATTTCCGAAC
TTCCTTCGAGATGCTCCGGTCGAGCGCAAGATCACTCGCAACCAACTGATGTTTCTGAATAGGGATTCGTCTGTTGCAGT
TGATTATCGAGATGCGCGACTCGTGGACCCCGTTAACGCTGTTACCGTCCTCCGGGCGAAACTTGATCCGTGGCTGTCGG
AAAAATGCGAGGAAGCTGGCGTCACTGTGATGTCAGGTGTTCGCGTTGACTCGTTGATCGAGCGTGATGGGCAGTTCGTC
GGGGTTCGAGCTGGTGACGATGAGTTGTATTCGCGTGTGGTCATTGCTGCCGACGGTGTGAATTCATTTCTGAGTCGTGA
CGCTGGGCTCCGTGGACCGGAGCCTAAGAACAATCTTGCCGTCGGCGTGAAGTCGGTAATTGGCCTTGACCCGAAAGTCA
TCGAAGAACGGTTCCAAGTTAAGAACGGCGAGGGGGCAGCGTACGCGGTTGTCGGTGACTGCACGAAAGGTGTTGGGGGA
GGTGGGTTCCTTTACACGAATATTGACAGCGTGTCAGCCGGGATCGTCCTACGGTTGGATGATTTAGAAAGGAGTGGGGA
GTCAAGCTCGCAGCTGCACGACCACTTCTTGACGCACCCGGTTGTTGCGCCACTCCTTGCTGGTGGCGAGCTGCTGGAAT
ACGGCTGTCATCTTGTAGCTGAAGGTGGTGCCAGTATGCAGCACGACCTGGTTGCGCCAGGGCTCTTGATCGTCGGCGAC
GCTGCCGGCTTTACGCTGAACACTGGGTTTACGGTACGGGGGATGGACCTCGCTGCAGGTTCCGCCCTCGCCGCTGCGAA
ATCGGTTGATCTAGCCTTGCGTAACCATGATGTCGGTCATGGGACTCTGGATGGTTATATCTCCACTTGCAATGAAAGTT
TCGTGGGTCGCGACATGAATACTTATCGGAACGCCCCGGCATTCCTGGAATCTCCAGAAATGTACGACGATGTCGGTCAG
CTCGCGGCGGACGTGATGTATAAGATTTATGGTCTCGATATGACCCCTCGAAAACACTTACTTCCGACGGTAGCCTCTGC
GGTGAGGTCATCGAACCTGAGTTTTTCCCAGATCGCCTCAATCGGGTTCAGAGCAATGAGGGCATTGTGA

Upstream 100 bases:

>100_bases
CTATTTTTGAGCAGGCTGATTATGGAATTGTCGGAGACCTCTATGCAGTTCTTCCCGAGCTGACAAAGGCATTGGCGCGA
TGACTGGGATCGCAGAACTG

Downstream 100 bases:

>100_bases
TGACAGCAAAAAGTGATGGTTTCGGGTCTGTAGCCTGTCGTCTTGCAAAAAATCATTATGACGTGGATGAGGATAACAGC
CACATTCATGTTAACCAAGA

Product: putative electron transfer flavoprotein-quinone oxidoreductase (FixC protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MRGVGSQPSETPPPLWDVPGVEPDFDVIVVGGGVAGAVAAYELAGEGHEVLLVERGREPGSKNLSGGVLYCRVLEEIFPN
FLRDAPVERKITRNQLMFLNRDSSVAVDYRDARLVDPVNAVTVLRAKLDPWLSEKCEEAGVTVMSGVRVDSLIERDGQFV
GVRAGDDELYSRVVIAADGVNSFLSRDAGLRGPEPKNNLAVGVKSVIGLDPKVIEERFQVKNGEGAAYAVVGDCTKGVGG
GGFLYTNIDSVSAGIVLRLDDLERSGESSSQLHDHFLTHPVVAPLLAGGELLEYGCHLVAEGGASMQHDLVAPGLLIVGD
AAGFTLNTGFTVRGMDLAAGSALAAAKSVDLALRNHDVGHGTLDGYISTCNESFVGRDMNTYRNAPAFLESPEMYDDVGQ
LAADVMYKIYGLDMTPRKHLLPTVASAVRSSNLSFSQIASIGFRAMRAL

Sequences:

>Translated_449_residues
MRGVGSQPSETPPPLWDVPGVEPDFDVIVVGGGVAGAVAAYELAGEGHEVLLVERGREPGSKNLSGGVLYCRVLEEIFPN
FLRDAPVERKITRNQLMFLNRDSSVAVDYRDARLVDPVNAVTVLRAKLDPWLSEKCEEAGVTVMSGVRVDSLIERDGQFV
GVRAGDDELYSRVVIAADGVNSFLSRDAGLRGPEPKNNLAVGVKSVIGLDPKVIEERFQVKNGEGAAYAVVGDCTKGVGG
GGFLYTNIDSVSAGIVLRLDDLERSGESSSQLHDHFLTHPVVAPLLAGGELLEYGCHLVAEGGASMQHDLVAPGLLIVGD
AAGFTLNTGFTVRGMDLAAGSALAAAKSVDLALRNHDVGHGTLDGYISTCNESFVGRDMNTYRNAPAFLESPEMYDDVGQ
LAADVMYKIYGLDMTPRKHLLPTVASAVRSSNLSFSQIASIGFRAMRAL
>Mature_449_residues
MRGVGSQPSETPPPLWDVPGVEPDFDVIVVGGGVAGAVAAYELAGEGHEVLLVERGREPGSKNLSGGVLYCRVLEEIFPN
FLRDAPVERKITRNQLMFLNRDSSVAVDYRDARLVDPVNAVTVLRAKLDPWLSEKCEEAGVTVMSGVRVDSLIERDGQFV
GVRAGDDELYSRVVIAADGVNSFLSRDAGLRGPEPKNNLAVGVKSVIGLDPKVIEERFQVKNGEGAAYAVVGDCTKGVGG
GGFLYTNIDSVSAGIVLRLDDLERSGESSSQLHDHFLTHPVVAPLLAGGELLEYGCHLVAEGGASMQHDLVAPGLLIVGD
AAGFTLNTGFTVRGMDLAAGSALAAAKSVDLALRNHDVGHGTLDGYISTCNESFVGRDMNTYRNAPAFLESPEMYDDVGQ
LAADVMYKIYGLDMTPRKHLLPTVASAVRSSNLSFSQIASIGFRAMRAL

Specific function: Probably accepts electrons from ydiQ/ydiR and reduces a quinone [H]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF-QO/fixC family [H]

Homologues:

Organism=Homo sapiens, GI119703746, Length=394, Percent_Identity=25.6345177664975, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI1787991, Length=395, Percent_Identity=47.0886075949367, Blast_Score=341, Evalue=6e-95,
Organism=Escherichia coli, GI1786227, Length=393, Percent_Identity=45.29262086514, Blast_Score=319, Evalue=2e-88,
Organism=Escherichia coli, GI87082155, Length=391, Percent_Identity=39.6419437340153, Blast_Score=240, Evalue=1e-64,
Organism=Caenorhabditis elegans, GI25144720, Length=428, Percent_Identity=26.4018691588785, Blast_Score=97, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6324932, Length=433, Percent_Identity=26.0969976905312, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24652256, Length=405, Percent_Identity=26.9135802469136, Blast_Score=100, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.5.5.-

Molecular weight: Translated: 47730; Mature: 47730

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGVGSQPSETPPPLWDVPGVEPDFDVIVVGGGVAGAVAAYELAGEGHEVLLVERGREPG
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCC
SKNLSGGVLYCRVLEEIFPNFLRDAPVERKITRNQLMFLNRDSSVAVDYRDARLVDPVNA
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCEEEEECCCEECCCHHH
VTVLRAKLDPWLSEKCEEAGVTVMSGVRVDSLIERDGQFVGVRAGDDELYSRVVIAADGV
HHHHHHHCCHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEECCCHHHHCEEEEEECCH
NSFLSRDAGLRGPEPKNNLAVGVKSVIGLDPKVIEERFQVKNGEGAAYAVVGDCTKGVGG
HHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
GGFLYTNIDSVSAGIVLRLDDLERSGESSSQLHDHFLTHPVVAPLLAGGELLEYGCHLVA
CCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEE
EGGASMQHDLVAPGLLIVGDAAGFTLNTGFTVRGMDLAAGSALAAAKSVDLALRNHDVGH
CCCCCCCHHHCCCCEEEEECCCCEEEECCEEEECCCCCCCCHHHHHHHHEEEEECCCCCC
GTLDGYISTCNESFVGRDMNTYRNAPAFLESPEMYDDVGQLAADVMYKIYGLDMTPRKHL
CCHHHHHHHHCHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LPTVASAVRSSNLSFSQIASIGFRAMRAL
HHHHHHHHHHCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRGVGSQPSETPPPLWDVPGVEPDFDVIVVGGGVAGAVAAYELAGEGHEVLLVERGREPG
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCC
SKNLSGGVLYCRVLEEIFPNFLRDAPVERKITRNQLMFLNRDSSVAVDYRDARLVDPVNA
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCEEEEECCCEECCCHHH
VTVLRAKLDPWLSEKCEEAGVTVMSGVRVDSLIERDGQFVGVRAGDDELYSRVVIAADGV
HHHHHHHCCHHHHHHHHHCCCEEEECCCHHHHHHCCCCEEEEECCCHHHHCEEEEEECCH
NSFLSRDAGLRGPEPKNNLAVGVKSVIGLDPKVIEERFQVKNGEGAAYAVVGDCTKGVGG
HHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
GGFLYTNIDSVSAGIVLRLDDLERSGESSSQLHDHFLTHPVVAPLLAGGELLEYGCHLVA
CCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEE
EGGASMQHDLVAPGLLIVGDAAGFTLNTGFTVRGMDLAAGSALAAAKSVDLALRNHDVGH
CCCCCCCHHHCCCCEEEEECCCCEEEECCEEEECCCCCCCCHHHHHHHHEEEEECCCCCC
GTLDGYISTCNESFVGRDMNTYRNAPAFLESPEMYDDVGQLAADVMYKIYGLDMTPRKHL
CCHHHHHHHHCHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LPTVASAVRSSNLSFSQIASIGFRAMRAL
HHHHHHHHHHCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]