Click here to switch to the map view.

The map label for this gene is ydcN [H]

Identifier: 50843643

GI number: 50843643

Start: 2390897

End: 2391763

Strand: Direct

Name: ydcN [H]

Synonym: PPA2208

Alternate gene names: 50843643

Gene position: 2390897-2391763 (Clockwise)

Preceding gene: 50843642

Following gene: 50843644

Centisome position: 93.38

GC content: 63.44

Gene sequence:

>867_bases
ATGAACGTATCCTCAGTTCCGACGAACTGCGGCAGCGGTGGATGCGAACACGTCCAGACCTCCATAGCGTGTCCTACATC
ACCGGACGATTCGATGAGGGCGGCACTGCCAACGAGCTCAATCGGTGGTTCGCCTGAAACCTCTACCGACGCGACCCTCA
ACCACCTGCCACGAGGGCTCCCCGGACCTCCGCTGAGTGGCAACACCAGCGATCATCTCCCGTGTGTTGCAGTTTCAACC
GGAATAACTGCGCTGCCCACAAAGTGCAGTATCATGCACTGTATGGACACGGGCACAGAGCCATTGGCACATGCGATCGG
CGCACGGGTCAAGCAACAGCGCATGACCCGGAGATGGACGCTCGATCAGCTCGCCAGCTACGCCGGGGTGAGCCGCCGCG
TGCTCGTAAACGTCGAGCAGGGCGCAGTGAATCCACGCGTAGGCACCCTGCTACGACTCTCGGACGCGCTCGGCGTCGGG
CTCCCAGCCCTCGTGGAACCCCCGGCTTCGCGCACCCCGAAACTCACCCGTAATGGGCAGGGCGCTGCCCTCTGGACTGG
CGAAGCAGGCGGCAAGGGCATGCTGGTCGCGGGCACGGAGCCGCCGGATGTGGTCGAACTGTGGGACTGGACGCTCGCGC
CCGGTGAGCGTCACGACAGCGAAGCGCACAGCGACGGCACCCGAGAACTCCTGCACGTGCAGGAGGGGACAGTCATAGTC
GAGGTCGACGGAAACCGCTACGACCTTGCACCCGGCGATGCGTTGTCGTTCTACGGCGACGCCGCCCATGCCTACATAAA
CTCAACCGATAATTCTGCCCGGTTCTCACTGACGGTGTTCGAGCCGGACGTGGGAACCGCACACTGA

Upstream 100 bases:

>100_bases
GCTCTTGGCCATCGTTTCCGAACGCACCATGCGATGGGAATGAGCAACGTCGTCTCGATGGCGATCCCGAGCGGTTTCCT
CGTCTGCATCGGAACCAAAG

Downstream 100 bases:

>100_bases
AAGGAAACCCCGATGCCTGAACCCATGACTCCCGAGACCTTCCTCGACGCCTGCACAGTGGACGAGGCCGTATTCGAACT
GCGCCCAGACTACCGAGCCC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MNVSSVPTNCGSGGCEHVQTSIACPTSPDDSMRAALPTSSIGGSPETSTDATLNHLPRGLPGPPLSGNTSDHLPCVAVST
GITALPTKCSIMHCMDTGTEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVG
LPALVEPPASRTPKLTRNGQGAALWTGEAGGKGMLVAGTEPPDVVELWDWTLAPGERHDSEAHSDGTRELLHVQEGTVIV
EVDGNRYDLAPGDALSFYGDAAHAYINSTDNSARFSLTVFEPDVGTAH

Sequences:

>Translated_288_residues
MNVSSVPTNCGSGGCEHVQTSIACPTSPDDSMRAALPTSSIGGSPETSTDATLNHLPRGLPGPPLSGNTSDHLPCVAVST
GITALPTKCSIMHCMDTGTEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVG
LPALVEPPASRTPKLTRNGQGAALWTGEAGGKGMLVAGTEPPDVVELWDWTLAPGERHDSEAHSDGTRELLHVQEGTVIV
EVDGNRYDLAPGDALSFYGDAAHAYINSTDNSARFSLTVFEPDVGTAH
>Mature_288_residues
MNVSSVPTNCGSGGCEHVQTSIACPTSPDDSMRAALPTSSIGGSPETSTDATLNHLPRGLPGPPLSGNTSDHLPCVAVST
GITALPTKCSIMHCMDTGTEPLAHAIGARVKQQRMTRRWTLDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVG
LPALVEPPASRTPKLTRNGQGAALWTGEAGGKGMLVAGTEPPDVVELWDWTLAPGERHDSEAHSDGTRELLHVQEGTVIV
EVDGNRYDLAPGDALSFYGDAAHAYINSTDNSARFSLTVFEPDVGTAH

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=183, Percent_Identity=28.4153005464481, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 30133; Mature: 30133

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVSSVPTNCGSGGCEHVQTSIACPTSPDDSMRAALPTSSIGGSPETSTDATLNHLPRGL
CCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCC
PGPPLSGNTSDHLPCVAVSTGITALPTKCSIMHCMDTGTEPLAHAIGARVKQQRMTRRWT
CCCCCCCCCCCCCCEEEECCCCEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
LDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVEPPASRTPKLTRNGQ
HHHHHHHCCCCEEEEEEECCCCCCCCHHHHEEEHHHHCCCCCHHCCCCCCCCCCCCCCCC
GAALWTGEAGGKGMLVAGTEPPDVVELWDWTLAPGERHDSEAHSDGTRELLHVQEGTVIV
CEEEEECCCCCCEEEEECCCCCCEEEECCEECCCCCCCCCHHCCCCHHHEEEEECCEEEE
EVDGNRYDLAPGDALSFYGDAAHAYINSTDNSARFSLTVFEPDVGTAH
EECCCEEECCCCCCHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MNVSSVPTNCGSGGCEHVQTSIACPTSPDDSMRAALPTSSIGGSPETSTDATLNHLPRGL
CCCCCCCCCCCCCCHHHHHHEEECCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCC
PGPPLSGNTSDHLPCVAVSTGITALPTKCSIMHCMDTGTEPLAHAIGARVKQQRMTRRWT
CCCCCCCCCCCCCCEEEECCCCEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
LDQLASYAGVSRRVLVNVEQGAVNPRVGTLLRLSDALGVGLPALVEPPASRTPKLTRNGQ
HHHHHHHCCCCEEEEEEECCCCCCCCHHHHEEEHHHHCCCCCHHCCCCCCCCCCCCCCCC
GAALWTGEAGGKGMLVAGTEPPDVVELWDWTLAPGERHDSEAHSDGTRELLHVQEGTVIV
CEEEEECCCCCCEEEEECCCCCCEEEECCEECCCCCCCCCHHCCCCHHHEEEEECCEEEE
EVDGNRYDLAPGDALSFYGDAAHAYINSTDNSARFSLTVFEPDVGTAH
EECCCEEECCCCCCHHHCCCCEEEEEECCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]