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The map label for this gene is ybbD [H]

Identifier: 50843601

GI number: 50843601

Start: 2343607

End: 2345577

Strand: Reverse

Name: ybbD [H]

Synonym: PPA2164

Alternate gene names: 50843601

Gene position: 2345577-2343607 (Counterclockwise)

Preceding gene: 50843609

Following gene: 50843595

Centisome position: 91.61

GC content: 63.12

Gene sequence:

>1971_bases
ATGCGAACCGACCTGCTTAGACTGGTCAGCCTCAGCCGTTGGCACAACTCCAGACGAGAACACAACATGAGGAGAAGTAC
CGTGAAACGACGCACTGTCATGGCCGCCGCGGCTGGAGCCTTTGCGGCATCAGCCCTTCCGCTGTCGCGAGCGGCAGCGG
ATGACACCCGGTCTCAGCTCGCCTCCATGACCTTGGACCAGAAGATCGGTCAAGTGCTATGGACCCATGTCTTCGGTGCC
AGCGCTGACGACGCTTCAATGGCGAGGAAGAATCAGCTGGCCTTTGGCGATGACGTCCGCACTCCGGCCCAGGCCGTGCA
GAAGTACCACCTTGGCGGGGTGCTGTACTTCAACTGGTCCGGTAACATCTCGACGCCCACGAATCCGGCCGCCGTCGCCC
ACCTTTCCAACGGCCTGCAAGAGGCGGCGAGGACGTCGTCGACGGCGCCGTTGGCCATCGCTGTCGATCAGGAGGGCGGT
ATCGTCGCGCGGATTACCTCCCCGGCCACCGAATTTCCAGGGAATATGGCGCTGGGTGCTGTCAATGACCCGCGCGCTGC
GCGTGCCCAAGGCGCGGTGCTCGGTCGCGAGCTGGCTGCCCTGGGCATTAACGTGGACTTCGCCCCGGACGTTGACGTCA
ACACTAACCCAGCCAATCCCGTAATCGGGGTGAGGTCCATGGGGGACGATCCGGTGCGCGTCGGGGTACTCGGCGTCGAG
CAGATTCGCGGCATTCAATCCAGAGGGGTTGCGGCCACCGCCAAGCATTTCCCAGGTCATGGTGATACCCAGATCGACTC
CCATCTTGGTCTTCCGGTCGTGGAGTACGGTCGCACTACCCTGGAGCGTCACCTGGTGCCCTTCCGCATGGCGATCAGCG
CGGAAGTGGACATGATCATGACAGCCCACATCATCGTTAAGACCTTGGACCCGACGATGCCGGCCACCCTGTCGAAGAAA
GTGCTTACTGGCCTGCTGCGCGAACAGATGGGGTATCGCGGCATCATCACCACCGACGCCCTGGACATGGAGGGCGCCCA
GCTTGCGGTCATGACCGAGGACGAGAAGGGCACGTATACCAGGCTCAAGGCTGCTGCCGACGCCGAGGGCAATGACCCCA
CGGCGGCCGATGAGGGGCATGCGAGTGCCGAGTTCAACGCCTTTATGAAACCGATCCGGGGGCGTGTTGCGGTGCAGGCT
TTCGAAGCCGGATCCGACATTTTGCTGAACCCCCATGACGCTGATGCCGTCGTCACAGCGATGCGGAGGGCTATCGCGGA
CGGTCGGGTTAGCGAGCGGCGTCTCGACGAATCGGTGCTGCGCATCCTCTCTTGGAAGCGGCGTCGCTGCATTACGGGCA
GGCCGGTTGACCTCGCGGCGGCCGATCGTGAGGTACGATCTGGCCGCAAGGTTGCTGACGACATCGCTGCCAGGTCGGTG
ACGATGCTGGTCAATGACGGCACTCTGCCGCTCAAGCCGTCACGGGTGCTCGTCACCGGAACACGTCGGGGTAATCCGGA
GTACCTCGTCGAGCCGTTGCGCTTGGCCGGATTCACCCCGATTCTTGTTCCGTCAACCGGACAGGAACCGACGACAGCCG
ATGTCGAGAAAGCGGTGACTGTCGGTGTTGATGCCGTCATCGTGGTCACGCACGGGTTGAAACGTGGAGATGCCCAGGAC
GCCATGGTTAAGGCTCTGGCGCGGACCGGGAATCCGGTCGTGGAGATTATGACAGGGACCCCGTACGACGTGGCGATGAC
TCATTGCCCGCATGCCGCACTAGCTGTCTACTCCAACCGCAAGGTGAGCATGGTTGCGGCTGTCGCGATGATGGCTGGAC
GAAACCCGGTGGGGCGACTTCCGGTACGGGTGCCCGACCCGAACGGAGGCACAGCTTTTCCGCGCGGTTTCGGGCTCAGC
TACCGCGCGACGCCCGGACCCTATGAGGGCCCGGGCGCGAAGACTGCTTGA

Upstream 100 bases:

>100_bases
CGCACACACAATTGCCATGGGAGAATCGCGTCGGTGTGATCGCCGGAGGTTGTCTCGTCAGGGAGACACCATTGACCGTA
TCACTACGGGTGGAGATGTC

Downstream 100 bases:

>100_bases
GCGGGGGTCACGTCAGATGACGTTGACAAGGTCGCAGACGAAGACCAGCGTCTCACCGCCAGCGATCACACCGGAGATTC
CTTGCGGACCGTAAGCAAGG

Product: putative beta-N-acetylglucosaminidase precursor

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MRTDLLRLVSLSRWHNSRREHNMRRSTVKRRTVMAAAAGAFAASALPLSRAAADDTRSQLASMTLDQKIGQVLWTHVFGA
SADDASMARKNQLAFGDDVRTPAQAVQKYHLGGVLYFNWSGNISTPTNPAAVAHLSNGLQEAARTSSTAPLAIAVDQEGG
IVARITSPATEFPGNMALGAVNDPRAARAQGAVLGRELAALGINVDFAPDVDVNTNPANPVIGVRSMGDDPVRVGVLGVE
QIRGIQSRGVAATAKHFPGHGDTQIDSHLGLPVVEYGRTTLERHLVPFRMAISAEVDMIMTAHIIVKTLDPTMPATLSKK
VLTGLLREQMGYRGIITTDALDMEGAQLAVMTEDEKGTYTRLKAAADAEGNDPTAADEGHASAEFNAFMKPIRGRVAVQA
FEAGSDILLNPHDADAVVTAMRRAIADGRVSERRLDESVLRILSWKRRRCITGRPVDLAAADREVRSGRKVADDIAARSV
TMLVNDGTLPLKPSRVLVTGTRRGNPEYLVEPLRLAGFTPILVPSTGQEPTTADVEKAVTVGVDAVIVVTHGLKRGDAQD
AMVKALARTGNPVVEIMTGTPYDVAMTHCPHAALAVYSNRKVSMVAAVAMMAGRNPVGRLPVRVPDPNGGTAFPRGFGLS
YRATPGPYEGPGAKTA

Sequences:

>Translated_656_residues
MRTDLLRLVSLSRWHNSRREHNMRRSTVKRRTVMAAAAGAFAASALPLSRAAADDTRSQLASMTLDQKIGQVLWTHVFGA
SADDASMARKNQLAFGDDVRTPAQAVQKYHLGGVLYFNWSGNISTPTNPAAVAHLSNGLQEAARTSSTAPLAIAVDQEGG
IVARITSPATEFPGNMALGAVNDPRAARAQGAVLGRELAALGINVDFAPDVDVNTNPANPVIGVRSMGDDPVRVGVLGVE
QIRGIQSRGVAATAKHFPGHGDTQIDSHLGLPVVEYGRTTLERHLVPFRMAISAEVDMIMTAHIIVKTLDPTMPATLSKK
VLTGLLREQMGYRGIITTDALDMEGAQLAVMTEDEKGTYTRLKAAADAEGNDPTAADEGHASAEFNAFMKPIRGRVAVQA
FEAGSDILLNPHDADAVVTAMRRAIADGRVSERRLDESVLRILSWKRRRCITGRPVDLAAADREVRSGRKVADDIAARSV
TMLVNDGTLPLKPSRVLVTGTRRGNPEYLVEPLRLAGFTPILVPSTGQEPTTADVEKAVTVGVDAVIVVTHGLKRGDAQD
AMVKALARTGNPVVEIMTGTPYDVAMTHCPHAALAVYSNRKVSMVAAVAMMAGRNPVGRLPVRVPDPNGGTAFPRGFGLS
YRATPGPYEGPGAKTA
>Mature_656_residues
MRTDLLRLVSLSRWHNSRREHNMRRSTVKRRTVMAAAAGAFAASALPLSRAAADDTRSQLASMTLDQKIGQVLWTHVFGA
SADDASMARKNQLAFGDDVRTPAQAVQKYHLGGVLYFNWSGNISTPTNPAAVAHLSNGLQEAARTSSTAPLAIAVDQEGG
IVARITSPATEFPGNMALGAVNDPRAARAQGAVLGRELAALGINVDFAPDVDVNTNPANPVIGVRSMGDDPVRVGVLGVE
QIRGIQSRGVAATAKHFPGHGDTQIDSHLGLPVVEYGRTTLERHLVPFRMAISAEVDMIMTAHIIVKTLDPTMPATLSKK
VLTGLLREQMGYRGIITTDALDMEGAQLAVMTEDEKGTYTRLKAAADAEGNDPTAADEGHASAEFNAFMKPIRGRVAVQA
FEAGSDILLNPHDADAVVTAMRRAIADGRVSERRLDESVLRILSWKRRRCITGRPVDLAAADREVRSGRKVADDIAARSV
TMLVNDGTLPLKPSRVLVTGTRRGNPEYLVEPLRLAGFTPILVPSTGQEPTTADVEKAVTVGVDAVIVVTHGLKRGDAQD
AMVKALARTGNPVVEIMTGTPYDVAMTHCPHAALAVYSNRKVSMVAAVAMMAGRNPVGRLPVRVPDPNGGTAFPRGFGLS
YRATPGPYEGPGAKTA

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=302, Percent_Identity=29.8013245033113, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 69777; Mature: 69777

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTDLLRLVSLSRWHNSRREHNMRRSTVKRRTVMAAAAGAFAASALPLSRAAADDTRSQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ASMTLDQKIGQVLWTHVFGASADDASMARKNQLAFGDDVRTPAQAVQKYHLGGVLYFNWS
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEEEEEEC
GNISTPTNPAAVAHLSNGLQEAARTSSTAPLAIAVDQEGGIVARITSPATEFPGNMALGA
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEC
VNDPRAARAQGAVLGRELAALGINVDFAPDVDVNTNPANPVIGVRSMGDDPVRVGVLGVE
CCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEHH
QIRGIQSRGVAATAKHFPGHGDTQIDSHLGLPVVEYGRTTLERHLVPFRMAISAEVDMIM
HHCCHHHCCCEEHHHHCCCCCCCCCCCCCCCCHHHHCHHHHHHHCCCEEEEECCCHHHHH
TAHIIVKTLDPTMPATLSKKVLTGLLREQMGYRGIITTDALDMEGAQLAVMTEDEKGTYT
HHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCCCEE
RLKAAADAEGNDPTAADEGHASAEFNAFMKPIRGRVAVQAFEAGSDILLNPHDADAVVTA
EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEECCCCHHHHHHH
MRRAIADGRVSERRLDESVLRILSWKRRRCITGRPVDLAAADREVRSGRKVADDIAARSV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHCCCHHHHHHHHCEE
TMLVNDGTLPLKPSRVLVTGTRRGNPEYLVEPLRLAGFTPILVPSTGQEPTTADVEKAVT
EEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
VGVDAVIVVTHGLKRGDAQDAMVKALARTGNPVVEIMTGTPYDVAMTHCPHAALAVYSNR
HCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCEEEEECCC
KVSMVAAVAMMAGRNPVGRLPVRVPDPNGGTAFPRGFGLSYRATPGPYEGPGAKTA
CHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTDLLRLVSLSRWHNSRREHNMRRSTVKRRTVMAAAAGAFAASALPLSRAAADDTRSQL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ASMTLDQKIGQVLWTHVFGASADDASMARKNQLAFGDDVRTPAQAVQKYHLGGVLYFNWS
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCEEEEEEEC
GNISTPTNPAAVAHLSNGLQEAARTSSTAPLAIAVDQEGGIVARITSPATEFPGNMALGA
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEC
VNDPRAARAQGAVLGRELAALGINVDFAPDVDVNTNPANPVIGVRSMGDDPVRVGVLGVE
CCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEHH
QIRGIQSRGVAATAKHFPGHGDTQIDSHLGLPVVEYGRTTLERHLVPFRMAISAEVDMIM
HHCCHHHCCCEEHHHHCCCCCCCCCCCCCCCCHHHHCHHHHHHHCCCEEEEECCCHHHHH
TAHIIVKTLDPTMPATLSKKVLTGLLREQMGYRGIITTDALDMEGAQLAVMTEDEKGTYT
HHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEECCCCCEE
RLKAAADAEGNDPTAADEGHASAEFNAFMKPIRGRVAVQAFEAGSDILLNPHDADAVVTA
EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEECCCCHHHHHHH
MRRAIADGRVSERRLDESVLRILSWKRRRCITGRPVDLAAADREVRSGRKVADDIAARSV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHCCCHHHHHHHHCEE
TMLVNDGTLPLKPSRVLVTGTRRGNPEYLVEPLRLAGFTPILVPSTGQEPTTADVEKAVT
EEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
VGVDAVIVVTHGLKRGDAQDAMVKALARTGNPVVEIMTGTPYDVAMTHCPHAALAVYSNR
HCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCEEEEECCC
KVSMVAAVAMMAGRNPVGRLPVRVPDPNGGTAFPRGFGLSYRATPGPYEGPGAKTA
CHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]