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The map label for this gene is yhdJ [C]

Identifier: 50843079

GI number: 50843079

Start: 1735601

End: 1737592

Strand: Direct

Name: yhdJ [C]

Synonym: PPA1611

Alternate gene names: 50843079

Gene position: 1735601-1737592 (Clockwise)

Preceding gene: 50843078

Following gene: 50843080

Centisome position: 67.79

GC content: 57.33

Gene sequence:

>1992_bases
ATGACCGCTCAACGCCTGCAGCTCACCTGGTACAACAAGGACAAGGCTCTCATCCCCACTGAGACCGGCAAGTACGGCTA
CACGTGGGTTGACCCCTCTGATCCGCGCTACTGCGAAACCCACACCCTCGTGCTGGACGACTATGTGCAAGGCAGCCAGA
CACCGAAGTCTGACGAGTTCGCCTACTCCGAGCGCGCTGACCTGGAGCCCCAGGATGACAACCTGCTGATCTTGGGTGAA
TCGGGCGATGTCCTCGAAGCCCTCACCCGCGTGCCCGAGCTTGCCGAGAAGTACGTCGGCAAGGTGAAACTGATCTACAT
CGATCCGCCGTTTAACACCGCGCAGACATTCGCTTCGTACGAGGACAACCTAGAGCACTCCATCTGGCTGACCATGATGC
GCGACCGACTGCACCACATGAAGAAGCTGCTTGCCGACGACGGCTCCATCTGGGTTCACCTTGACTACGCGGAGAACCAC
CGTATGCGACTGCTGCTGGATGAGGTCTTCGGTTGCTCAAACTTCATTGCCGAGTTCGTGTGGCAGAAAGCAGACTCGCC
GCGAGGTGACGCTCAACGTGTTTCGGTGGATCAAGATGTGATCCTTTGCTATGCCGCGAGTGGAAGCACAGTCATGAATC
GTATGGAAAGGACTGCCGCAGATAACGCCCGCTTCAGTAATCCTGACGGCGACTCTAAAGGTGTTTGGTTCAGTGATAAC
CGCTCCGCGCCCACAAACGTTATGTCTTGGCAGCACCCTAGCACCTTTGCAATTCAGCACCCAATCAGTGGCGAGATGAT
CTACCCGGCCAAGGGTGGATGCTGGCGTTTTGGTAGAGAACGTCTCCTTGAGTCATTGAACGAGTACGCGGAGTATGCAA
GCGGTGATGTAGACATTGCGGCTCGGGTTGCAAACACATCGCTTCGGTCAGATCAGGTTCGTTCAGACATTCCTGACCTG
GTATTGGTCGACCCCGCTTCAGCGGCTCAATGTGCTCGCACAAGAATTGATGATGGAAATTGGCCAGAATTCTTCGTGAC
TGCAACCAGCTTCGGCAGAAAGTCCTATCCTCCTAATGAAGGTCAGCCTGCCCGTTCATGGTGGCCTAATGATCAGGTGG
GACACAATCGCGAAGCTAAGTCAGAAATAAAGGCTCTCTTTTCCGGTGCGACGCCTTTCTCTACCCCCAAGCCTGAACGT
CTCCTCGAACGCATCATTCATATCGGGTCGAACCCGGGCGACATTGTGCTGGATGTGTTCGCTGGGTCGGGGACGACGGC
AGCCGTCGCGCAGAAGATGGGGCGGCGTTGGGTGACGTGCGAATTGCTGGAGTCGACGTTCACAACGTTTACGCGTCCCC
GTCTGGAGAAGGTGCTCAACGATCAAGACCCGGGCGGGATCACTCGGACTAAGGGCGAACGAGTCGACGCTACGGAAGAC
GGGCTGCCTGATGGTGTCTCGCCGGAGGACGCCGCGAAATTCACGAGCGTGCTCAACAAGCTGATCAAGGACGACCCGGA
ATTGAAGAAAAGCATCGAGGTGAAGACACTGAAGGCTGCCTCGAAGACCAGACGCACGAAGGAAGTAGTGAACTGGCGTG
GTGGCGGCGGCTTCCAGGTCGCCCATCTGTCGCCTGCGTGTTTCGACTACGCCCCTGAACTGGACCGGGTGATGCTAACT
GCGGCCGCGACCGGACAGACTCTGATCGAGTCGGTGACTGCCAACCTCGGGTTCACACTGTTGCACCCGGATGATGACTA
TATTTTTGATGCCCGCCGTGGCAATGCCTTGTTGAAGGTGGTGGAGGGTGTGGCCACGACCGAGATCGTTGACTGGCTTG
CTTCCCAAATCCAGCCCGGCGAGACAATCGTGCTGGCCGCCACCACGGTGATGGACGGCGTGCGCCAGCATCTGCGCAAA
CTGGTGAAGGGGTCGCGGGTGGTCGCATTGCCCGATGATGTGTTTCGGTACAGCGAAGGTGGTGACCAGTGA

Upstream 100 bases:

>100_bases
CACCACCGACGTCCTTGCCCGCATCTGCGAAGCACTCGACTGTGACATCGCCGACATCTGCGAGGTCGTCCCCACCGACC
TGAAGGGAGAGACCGACTAG

Downstream 100 bases:

>100_bases
TGGCGAACAGGCTCAACATCAGTTTTGACTCCGACATGCTGGAGTCGATCAGTGCCGAGTTCGACCTGCGTGCTCCGAAC
AAGGAAGCACTGCGCCAGCT

Product: putative type III restriction-modification system

Products: NA

Alternate protein names: M.HindVIP; HindVIP methyltransferase [H]

Number of amino acids: Translated: 663; Mature: 662

Protein sequence:

>663_residues
MTAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEFAYSERADLEPQDDNLLILGE
SGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASYEDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENH
RMRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDN
RSAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIAARVANTSLRSDQVRSDIPDL
VLVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNEGQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPER
LLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATED
GLPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQVAHLSPACFDYAPELDRVMLT
AAATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKVVEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRK
LVKGSRVVALPDDVFRYSEGGDQ

Sequences:

>Translated_663_residues
MTAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEFAYSERADLEPQDDNLLILGE
SGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASYEDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENH
RMRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDN
RSAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIAARVANTSLRSDQVRSDIPDL
VLVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNEGQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPER
LLERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATED
GLPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQVAHLSPACFDYAPELDRVMLT
AAATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKVVEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRK
LVKGSRVVALPDDVFRYSEGGDQ
>Mature_662_residues
TAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEFAYSERADLEPQDDNLLILGES
GDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASYEDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENHR
MRLLLDEVFGCSNFIAEFVWQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDNR
SAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIAARVANTSLRSDQVRSDIPDLV
LVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNEGQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPERL
LERIIHIGSNPGDIVLDVFAGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATEDG
LPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQVAHLSPACFDYAPELDRVMLTA
AATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKVVEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRKL
VKGSRVVALPDDVFRYSEGGDQ

Specific function: Unknown

COG id: COG2189

COG function: function code L; Adenine specific DNA methylase Mod

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002941
- InterPro:   IPR002052
- InterPro:   IPR001091 [H]

Pfam domain/function: PF01555 N6_N4_Mtase [H]

EC number: =2.1.1.72 [H]

Molecular weight: Translated: 73780; Mature: 73649

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEF
CCCCEEEEEEECCCCEECCCCCCCCCEEECCCCCCCEECEEEEEEEHHHCCCCCCCCCCC
AYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASY
CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
EDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENHRMRLLLDEVFGCSNFIAEFV
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCHHHHHHHHH
WQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDN
HHHCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
RSAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIA
CCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
ARVANTSLRSDQVRSDIPDLVLVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNE
EEHHHCCHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC
GQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPERLLERIIHIGSNPGDIVLDVF
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE
AGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATED
CCCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
GLPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQV
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
AHLSPACFDYAPELDRVMLTAAATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKV
EECCCHHHHCCCCHHHEEEEHHCCHHHHHHHHHHHCCEEEECCCCCEEEECCCCCHHHHH
VEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRKLVKGSRVVALPDDVFRYSEG
HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCC
GDQ
CCC
>Mature Secondary Structure 
TAQRLQLTWYNKDKALIPTETGKYGYTWVDPSDPRYCETHTLVLDDYVQGSQTPKSDEF
CCCEEEEEEECCCCEECCCCCCCCCEEECCCCCCCEECEEEEEEEHHHCCCCCCCCCCC
AYSERADLEPQDDNLLILGESGDVLEALTRVPELAEKYVGKVKLIYIDPPFNTAQTFASY
CCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
EDNLEHSIWLTMMRDRLHHMKKLLADDGSIWVHLDYAENHRMRLLLDEVFGCSNFIAEFV
HCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCHHHHHHHHH
WQKADSPRGDAQRVSVDQDVILCYAASGSTVMNRMERTAADNARFSNPDGDSKGVWFSDN
HHHCCCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCC
RSAPTNVMSWQHPSTFAIQHPISGEMIYPAKGGCWRFGRERLLESLNEYAEYASGDVDIA
CCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
ARVANTSLRSDQVRSDIPDLVLVDPASAAQCARTRIDDGNWPEFFVTATSFGRKSYPPNE
EEHHHCCHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC
GQPARSWWPNDQVGHNREAKSEIKALFSGATPFSTPKPERLLERIIHIGSNPGDIVLDVF
CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE
AGSGTTAAVAQKMGRRWVTCELLESTFTTFTRPRLEKVLNDQDPGGITRTKGERVDATED
CCCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
GLPDGVSPEDAAKFTSVLNKLIKDDPELKKSIEVKTLKAASKTRRTKEVVNWRGGGGFQV
CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
AHLSPACFDYAPELDRVMLTAAATGQTLIESVTANLGFTLLHPDDDYIFDARRGNALLKV
EECCCHHHHCCCCHHHEEEEHHCCHHHHHHHHHHHCCEEEECCCCCEEEECCCCCHHHHH
VEGVATTEIVDWLASQIQPGETIVLAATTVMDGVRQHLRKLVKGSRVVALPDDVFRYSEG
HHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCC
GDQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]