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The map label for this gene is pafB [H]

Identifier: 50842864

GI number: 50842864

Start: 1502527

End: 1503489

Strand: Reverse

Name: pafB [H]

Synonym: PPA1382

Alternate gene names: 50842864

Gene position: 1503489-1502527 (Counterclockwise)

Preceding gene: 50842866

Following gene: 50842863

Centisome position: 58.72

GC content: 61.99

Gene sequence:

>963_bases
ATGGCTGCACAGCGTTCGGAGAGATTGGTTAACCTCGTCATCGCTCTCCTGGTCACCGACCGTCCTCTCACGCGTGCGCA
GCTGCGTGACATGATCGAGGACTACCGCAAGGTTTCCGAGGTAGCGTTTCAACGGTCCTTTGAACGCGACAAAGAGGAGC
TGCGTCGAATCGGTATCACCGTCGAATCGGTCACCCTCGACACCTTCTTCGGTGACGAGGTCGGCTACCGCATTCCCCGT
GCCGATGTGGAGCTTCCCCCTGTCCAATTTACGCAAGCGGAGGCTGACGCTTTAGCGACCGCAGCCCGAGTGTGGCGCGA
ATCCGTCCTCGACGAGTCCTCCACGTCTGCCCTGGTGAAGTTGCGTGCCGCAGGAGTTGAGCCCGACACGGAGGCCGGCA
TCGCGACCCAGGTCGTCACTGGCGCAGACGCGCCATCGTTCTCTGATCTGTGGCGGGCCACTATTGACCGGTCCAGGGTC
CGCTTCGGTTACCGAGGGGGAAAGCACCGTACCGTAGACCCCTGGCGAATGGCCTTGCGGCGTGGTCGTTGGTACCTCGT
TGGACGAGACGTCGACCGCGATGAGCCACGACTATTTCGGCTGTCACGTATCAGTTCTGCCGTGACGACCGTGGGAGAAC
CCGGCGCCGTCGCGAGTCCTGAACCTGAGGTGATCGAGGCCCACCTCAATCGCCTCGAGCCACCTGAACCGGAGGAGGTT
GACGTCACGATGGCCGTCGCCCCCGGAGTGCGTTTAGGGGTCATGACTACGCATGCCGAATGGGATGGGCCAGTTCCCGA
GGGCTACGAAGTTGTTACCGGTGGGTTTGGCGGATATGACGAGGCCGCGACAGCCGTGCTACGCGCCGGCGGTCGTATCA
TCCTGCTTGCCCCCCAGGAGGCTCGCACTATATTAGCCGAGAGGATCAATGCCGTGCTGCGGTTGGAAGAGAACGCCTCA
TGA

Upstream 100 bases:

>100_bases
CGAAATCGGTCACGAGCGGCAGTGTAGGCAACAATTGGGGTGACGCGGCGGGCATGCCCCCGTCAGATGGGTAGGCTGGG
ACGCTGGAAGGAGGGTGCCG

Downstream 100 bases:

>100_bases
CGGCTCGCACTGATACCGCCCGTCTGCTAGCTCTTATTCCCTATCTGCGATCTCACCCTGGGGTGGCCGTCACCGAGGTT
GCCCGAGTGTTTGGTGTCAG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MAAQRSERLVNLVIALLVTDRPLTRAQLRDMIEDYRKVSEVAFQRSFERDKEELRRIGITVESVTLDTFFGDEVGYRIPR
ADVELPPVQFTQAEADALATAARVWRESVLDESSTSALVKLRAAGVEPDTEAGIATQVVTGADAPSFSDLWRATIDRSRV
RFGYRGGKHRTVDPWRMALRRGRWYLVGRDVDRDEPRLFRLSRISSAVTTVGEPGAVASPEPEVIEAHLNRLEPPEPEEV
DVTMAVAPGVRLGVMTTHAEWDGPVPEGYEVVTGGFGGYDEAATAVLRAGGRIILLAPQEARTILAERINAVLRLEENAS

Sequences:

>Translated_320_residues
MAAQRSERLVNLVIALLVTDRPLTRAQLRDMIEDYRKVSEVAFQRSFERDKEELRRIGITVESVTLDTFFGDEVGYRIPR
ADVELPPVQFTQAEADALATAARVWRESVLDESSTSALVKLRAAGVEPDTEAGIATQVVTGADAPSFSDLWRATIDRSRV
RFGYRGGKHRTVDPWRMALRRGRWYLVGRDVDRDEPRLFRLSRISSAVTTVGEPGAVASPEPEVIEAHLNRLEPPEPEEV
DVTMAVAPGVRLGVMTTHAEWDGPVPEGYEVVTGGFGGYDEAATAVLRAGGRIILLAPQEARTILAERINAVLRLEENAS
>Mature_319_residues
AAQRSERLVNLVIALLVTDRPLTRAQLRDMIEDYRKVSEVAFQRSFERDKEELRRIGITVESVTLDTFFGDEVGYRIPRA
DVELPPVQFTQAEADALATAARVWRESVLDESSTSALVKLRAAGVEPDTEAGIATQVVTGADAPSFSDLWRATIDRSRVR
FGYRGGKHRTVDPWRMALRRGRWYLVGRDVDRDEPRLFRLSRISSAVTTVGEPGAVASPEPEVIEAHLNRLEPPEPEEVD
VTMAVAPGVRLGVMTTHAEWDGPVPEGYEVVTGGFGGYDEAATAVLRAGGRIILLAPQEARTILAERINAVLRLEENAS

Specific function: Does not seem to be involved in pupylation or substrate degradation [H]

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pafB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35373; Mature: 35242

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQRSERLVNLVIALLVTDRPLTRAQLRDMIEDYRKVSEVAFQRSFERDKEELRRIGIT
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
VESVTLDTFFGDEVGYRIPRADVELPPVQFTQAEADALATAARVWRESVLDESSTSALVK
EEEEEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEE
LRAAGVEPDTEAGIATQVVTGADAPSFSDLWRATIDRSRVRFGYRGGKHRTVDPWRMALR
EEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHH
RGRWYLVGRDVDRDEPRLFRLSRISSAVTTVGEPGAVASPEPEVIEAHLNRLEPPEPEEV
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCE
DVTMAVAPGVRLGVMTTHAEWDGPVPEGYEVVTGGFGGYDEAATAVLRAGGRIILLAPQE
EEEEEECCCCEEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCHH
ARTILAERINAVLRLEENAS
HHHHHHHHHHHHEEECCCCC
>Mature Secondary Structure 
AAQRSERLVNLVIALLVTDRPLTRAQLRDMIEDYRKVSEVAFQRSFERDKEELRRIGIT
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
VESVTLDTFFGDEVGYRIPRADVELPPVQFTQAEADALATAARVWRESVLDESSTSALVK
EEEEEEEHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHEEE
LRAAGVEPDTEAGIATQVVTGADAPSFSDLWRATIDRSRVRFGYRGGKHRTVDPWRMALR
EEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHH
RGRWYLVGRDVDRDEPRLFRLSRISSAVTTVGEPGAVASPEPEVIEAHLNRLEPPEPEEV
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCE
DVTMAVAPGVRLGVMTTHAEWDGPVPEGYEVVTGGFGGYDEAATAVLRAGGRIILLAPQE
EEEEEECCCCEEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCHH
ARTILAERINAVLRLEENAS
HHHHHHHHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]