Click here to switch to the map view.

The map label for this gene is yfmR [H]

Identifier: 50842169

GI number: 50842169

Start: 747509

End: 749314

Strand: Reverse

Name: yfmR [H]

Synonym: PPA0682

Alternate gene names: 50842169

Gene position: 749314-747509 (Counterclockwise)

Preceding gene: 50842170

Following gene: 50842168

Centisome position: 29.27

GC content: 61.07

Gene sequence:

>1806_bases
TTGGCCGGCACAAATATCGTCAACGCCGATCGCATCTCAAAGTCCTGGGGCACCCGAACGGTCCTCTCAGAGGTGTCTCT
GGGGCTATCAACCGGGGACGTCATCGGCGTCGTGGGCCGCAACGGGGACGGCAAATCTACCCTCTTAGCCCTCCTCACTG
GTTCCCTAGAACCCGACTCCGGGACAGTGACGCGTACTAATGGCATTTCCATAGGAGTGCTCGCCCAAGCTGAAACCCGC
AGGGATCAGACCGTCCGCGACCTCGTCGTCGGAGGCCAACCCGACCACGTTTGGGCAGCTAACCGCGAGGCTCGTCCCAT
CGTCGAGGACATGCTTTCCGATATTGACCTCGACCGCGCTATGGCCGATCTTTCCGGTGGGGAACGACGGCGGGCTGCGC
TGGTTTCAATCATGCTCGGAGACCACGACTTACTTGTTCTTGACGAGCCCACCAACCACCTCGACGTCGAGGCGGTGGCC
TGTTTGGCCGGCCACCTGCGCCACCTACAGGAGCGCGGCGTGGCAATGCTCGTCGTCTCACACGACCGTTGGTTTCTTGA
CGAGATCTGCACTGACATCTGGGAGGTCCACGACGCCACCGTCGAGGCTTATCAGGGCGGATACTCGGCCTACACCTTAG
CCCGGGTAGAACGAGCGCGCATCGCCGCCAGCAACGAGGCCAAGCGTCAAAATCTGGCGCGTAAAGAATTGGCGTGGTTG
CGACGGGGAGCCCCTGCCCGTAGCTCCAAACCGCGTTACCGAGTCGAGGCGGCCAACGCCCTCATCGCCGATGTCCCCGA
GCCCCGCGACAAGCTACAGCTAGCACGCTTTTCCGCGACACGGCTGGGTAAAGATGTGCTGGACCTCAACGATGTCACCG
TCACCGTGTCCTCCGACGAGCTTGGCGAGCGCACCCTGCTTGACAAAGTGACCTGCTCGATCGGCCCGGGCGACCGGATC
GGCCTGGTCGGCGTCAATGGAGCTGGTAAGACCACCTTGCTCAACCTCTTTGACGGCTCTCGTAAGCCCGACTCAGGCCG
GGTCAAACAGGGAAAGACCCTGCGACTGGCCCACCTGCGTCAGGAAGTTGATGACCTCGACTCAACAATGACCGTCCTAG
AATCCGTCAACGACGTCAAAGCGAGAACGAAACTAGCCACCGGCCGTGATGCCTCCGCCACTGATCTCCTCGAAGGATTC
GGGTTTACCGGGCAGAAACTCGTTACCCGTATCGGCGATCTTTCAGGTGGCGAGCGGCGTCGTCTTCAACTGCTGCGCCT
CCTCATGGACGAACCCAATGTGCTCCTCCTCGACGAGCCGACCAACGACCTCGACATTGACACCCTGCGCCTACTCGAGG
ACTACCTCGATTCCTGGCCCGGCACACTGATCGTCGTTTCCCATGACAGATGGTTCCTGGAACGGGTCTGCGACGTAGTT
TGGGCTCTCATGGGAGATGGCACGGTAGCGCTCCTGCCCGGGGGGATTTCCCAATATCTAGAGCACCGCCGCGACCGTAA
AACCGGCCCCTCGAAATCAAGCCGGGTAGGCAGTACGTCCCGGGCCGACGAGCCAAAGATAAGCGCCGCCGAGCTACGCC
AGGCCCGCAAGGACATGGACAGGCTCGATCGTCAGATGGGAAAGGTCCGCGATGAGCTGGCTGCCCTGCATGAGGAAATG
GCCACCAAAGCCGACGACTACCAAGCCTTGGTACATCTCCAGACGAAGGCCAACGAACTCGACGCGCGGATGACTTCCCT
TGAGGAACAGTGGCTCGAGACCGCCGACATTGTGGAGGATCAGTGA

Upstream 100 bases:

>100_bases
GCCCTTGACGCCATGCGCCCCAAAGTGCCGCTTCCTAAGGGCCCAATGCCAAGTTCTATGAAGGGCGCTCGCGCCGCCAT
GCGAGGACGCTGAGCCTCCG

Downstream 100 bases:

>100_bases
CCCTTCAAGACGATAGCCCCATCTCCGGGAAGCGACCGGCCTCATCCCTCTTCTGGCCAGCAATCGCGGTCATCATGACG
ACGGTGACGTGGACGTTGGC

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 600

Protein sequence:

>601_residues
MAGTNIVNADRISKSWGTRTVLSEVSLGLSTGDVIGVVGRNGDGKSTLLALLTGSLEPDSGTVTRTNGISIGVLAQAETR
RDQTVRDLVVGGQPDHVWAANREARPIVEDMLSDIDLDRAMADLSGGERRRAALVSIMLGDHDLLVLDEPTNHLDVEAVA
CLAGHLRHLQERGVAMLVVSHDRWFLDEICTDIWEVHDATVEAYQGGYSAYTLARVERARIAASNEAKRQNLARKELAWL
RRGAPARSSKPRYRVEAANALIADVPEPRDKLQLARFSATRLGKDVLDLNDVTVTVSSDELGERTLLDKVTCSIGPGDRI
GLVGVNGAGKTTLLNLFDGSRKPDSGRVKQGKTLRLAHLRQEVDDLDSTMTVLESVNDVKARTKLATGRDASATDLLEGF
GFTGQKLVTRIGDLSGGERRRLQLLRLLMDEPNVLLLDEPTNDLDIDTLRLLEDYLDSWPGTLIVVSHDRWFLERVCDVV
WALMGDGTVALLPGGISQYLEHRRDRKTGPSKSSRVGSTSRADEPKISAAELRQARKDMDRLDRQMGKVRDELAALHEEM
ATKADDYQALVHLQTKANELDARMTSLEEQWLETADIVEDQ

Sequences:

>Translated_601_residues
MAGTNIVNADRISKSWGTRTVLSEVSLGLSTGDVIGVVGRNGDGKSTLLALLTGSLEPDSGTVTRTNGISIGVLAQAETR
RDQTVRDLVVGGQPDHVWAANREARPIVEDMLSDIDLDRAMADLSGGERRRAALVSIMLGDHDLLVLDEPTNHLDVEAVA
CLAGHLRHLQERGVAMLVVSHDRWFLDEICTDIWEVHDATVEAYQGGYSAYTLARVERARIAASNEAKRQNLARKELAWL
RRGAPARSSKPRYRVEAANALIADVPEPRDKLQLARFSATRLGKDVLDLNDVTVTVSSDELGERTLLDKVTCSIGPGDRI
GLVGVNGAGKTTLLNLFDGSRKPDSGRVKQGKTLRLAHLRQEVDDLDSTMTVLESVNDVKARTKLATGRDASATDLLEGF
GFTGQKLVTRIGDLSGGERRRLQLLRLLMDEPNVLLLDEPTNDLDIDTLRLLEDYLDSWPGTLIVVSHDRWFLERVCDVV
WALMGDGTVALLPGGISQYLEHRRDRKTGPSKSSRVGSTSRADEPKISAAELRQARKDMDRLDRQMGKVRDELAALHEEM
ATKADDYQALVHLQTKANELDARMTSLEEQWLETADIVEDQ
>Mature_600_residues
AGTNIVNADRISKSWGTRTVLSEVSLGLSTGDVIGVVGRNGDGKSTLLALLTGSLEPDSGTVTRTNGISIGVLAQAETRR
DQTVRDLVVGGQPDHVWAANREARPIVEDMLSDIDLDRAMADLSGGERRRAALVSIMLGDHDLLVLDEPTNHLDVEAVAC
LAGHLRHLQERGVAMLVVSHDRWFLDEICTDIWEVHDATVEAYQGGYSAYTLARVERARIAASNEAKRQNLARKELAWLR
RGAPARSSKPRYRVEAANALIADVPEPRDKLQLARFSATRLGKDVLDLNDVTVTVSSDELGERTLLDKVTCSIGPGDRIG
LVGVNGAGKTTLLNLFDGSRKPDSGRVKQGKTLRLAHLRQEVDDLDSTMTVLESVNDVKARTKLATGRDASATDLLEGFG
FTGQKLVTRIGDLSGGERRRLQLLRLLMDEPNVLLLDEPTNDLDIDTLRLLEDYLDSWPGTLIVVSHDRWFLERVCDVVW
ALMGDGTVALLPGGISQYLEHRRDRKTGPSKSSRVGSTSRADEPKISAAELRQARKDMDRLDRQMGKVRDELAALHEEMA
TKADDYQALVHLQTKANELDARMTSLEEQWLETADIVEDQ

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=532, Percent_Identity=29.3233082706767, Blast_Score=179, Evalue=9e-45,
Organism=Homo sapiens, GI10947137, Length=550, Percent_Identity=25.4545454545455, Blast_Score=162, Evalue=7e-40,
Organism=Homo sapiens, GI27881506, Length=551, Percent_Identity=25.4083484573503, Blast_Score=162, Evalue=8e-40,
Organism=Homo sapiens, GI10947135, Length=543, Percent_Identity=26.5193370165746, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI69354671, Length=543, Percent_Identity=26.5193370165746, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI156105685, Length=180, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI2367384, Length=526, Percent_Identity=35.171102661597, Blast_Score=275, Evalue=5e-75,
Organism=Escherichia coli, GI1789751, Length=635, Percent_Identity=29.1338582677165, Blast_Score=227, Evalue=2e-60,
Organism=Escherichia coli, GI1787182, Length=522, Percent_Identity=31.8007662835249, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1787041, Length=515, Percent_Identity=28.5436893203883, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1786975, Length=474, Percent_Identity=24.6835443037975, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788165, Length=183, Percent_Identity=33.879781420765, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI48995001, Length=510, Percent_Identity=22.156862745098, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1786345, Length=195, Percent_Identity=34.3589743589744, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1790739, Length=192, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1790525, Length=202, Percent_Identity=28.2178217821782, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1787758, Length=184, Percent_Identity=29.8913043478261, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788210, Length=476, Percent_Identity=22.0588235294118, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787029, Length=206, Percent_Identity=26.6990291262136, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=28.436018957346, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789593, Length=205, Percent_Identity=31.219512195122, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081782, Length=248, Percent_Identity=30.6451612903226, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1788225, Length=203, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081791, Length=176, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786398, Length=248, Percent_Identity=27.0161290322581, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788644, Length=229, Percent_Identity=27.0742358078603, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87081709, Length=205, Percent_Identity=25.8536585365854, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1786803, Length=201, Percent_Identity=29.3532338308458, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1790534, Length=208, Percent_Identity=27.4038461538462, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786319, Length=215, Percent_Identity=27.4418604651163, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788897, Length=192, Percent_Identity=27.0833333333333, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786698, Length=152, Percent_Identity=32.2368421052632, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1788472, Length=218, Percent_Identity=25.2293577981651, Blast_Score=63, Evalue=7e-11,
Organism=Escherichia coli, GI1786703, Length=214, Percent_Identity=30.8411214953271, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=550, Percent_Identity=29.4545454545455, Blast_Score=179, Evalue=4e-45,
Organism=Caenorhabditis elegans, GI17559834, Length=398, Percent_Identity=28.894472361809, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17555318, Length=543, Percent_Identity=26.3351749539595, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI25146777, Length=200, Percent_Identity=28.5, Blast_Score=69, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=225, Percent_Identity=28, Blast_Score=65, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=182, Percent_Identity=27.4725274725275, Blast_Score=65, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=386, Percent_Identity=32.3834196891192, Blast_Score=171, Evalue=3e-43,
Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=27.7064220183486, Blast_Score=167, Evalue=5e-42,
Organism=Saccharomyces cerevisiae, GI6325030, Length=389, Percent_Identity=29.5629820051414, Blast_Score=130, Evalue=5e-31,
Organism=Saccharomyces cerevisiae, GI6324314, Length=361, Percent_Identity=27.4238227146814, Blast_Score=113, Evalue=8e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=354, Percent_Identity=26.8361581920904, Blast_Score=103, Evalue=8e-23,
Organism=Drosophila melanogaster, GI24666836, Length=524, Percent_Identity=30.3435114503817, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI24641342, Length=522, Percent_Identity=27.9693486590038, Blast_Score=171, Evalue=2e-42,
Organism=Drosophila melanogaster, GI24642252, Length=562, Percent_Identity=27.5800711743772, Blast_Score=168, Evalue=8e-42,
Organism=Drosophila melanogaster, GI18859989, Length=562, Percent_Identity=27.5800711743772, Blast_Score=168, Evalue=8e-42,
Organism=Drosophila melanogaster, GI24661270, Length=525, Percent_Identity=24.1904761904762, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21355589, Length=525, Percent_Identity=24.1904761904762, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24662800, Length=179, Percent_Identity=32.4022346368715, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007184, Length=200, Percent_Identity=28, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221500365, Length=200, Percent_Identity=28, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 66090; Mature: 65958

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTNIVNADRISKSWGTRTVLSEVSLGLSTGDVIGVVGRNGDGKSTLLALLTGSLEPDS
CCCCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCC
GTVTRTNGISIGVLAQAETRRDQTVRDLVVGGQPDHVWAANREARPIVEDMLSDIDLDRA
CCEEECCCEEEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCHHHH
MADLSGGERRRAALVSIMLGDHDLLVLDEPTNHLDVEAVACLAGHLRHLQERGVAMLVVS
HHHCCCCCHHHHHHEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE
HDRWFLDEICTDIWEVHDATVEAYQGGYSAYTLARVERARIAASNEAKRQNLARKELAWL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RRGAPARSSKPRYRVEAANALIADVPEPRDKLQLARFSATRLGKDVLDLNDVTVTVSSDE
HCCCCCCCCCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCEEEEECCCC
LGERTLLDKVTCSIGPGDRIGLVGVNGAGKTTLLNLFDGSRKPDSGRVKQGKTLRLAHLR
CCHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
QEVDDLDSTMTVLESVNDVKARTKLATGRDASATDLLEGFGFTGQKLVTRIGDLSGGERR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHH
RLQLLRLLMDEPNVLLLDEPTNDLDIDTLRLLEDYLDSWPGTLIVVSHDRWFLERVCDVV
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
WALMGDGTVALLPGGISQYLEHRRDRKTGPSKSSRVGSTSRADEPKISAAELRQARKDMD
HHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RLDRQMGKVRDELAALHEEMATKADDYQALVHLQTKANELDARMTSLEEQWLETADIVED
HHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q
C
>Mature Secondary Structure 
AGTNIVNADRISKSWGTRTVLSEVSLGLSTGDVIGVVGRNGDGKSTLLALLTGSLEPDS
CCCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCC
GTVTRTNGISIGVLAQAETRRDQTVRDLVVGGQPDHVWAANREARPIVEDMLSDIDLDRA
CCEEECCCEEEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCHHHH
MADLSGGERRRAALVSIMLGDHDLLVLDEPTNHLDVEAVACLAGHLRHLQERGVAMLVVS
HHHCCCCCHHHHHHEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEE
HDRWFLDEICTDIWEVHDATVEAYQGGYSAYTLARVERARIAASNEAKRQNLARKELAWL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RRGAPARSSKPRYRVEAANALIADVPEPRDKLQLARFSATRLGKDVLDLNDVTVTVSSDE
HCCCCCCCCCCCEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCEEEEECCCC
LGERTLLDKVTCSIGPGDRIGLVGVNGAGKTTLLNLFDGSRKPDSGRVKQGKTLRLAHLR
CCHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHH
QEVDDLDSTMTVLESVNDVKARTKLATGRDASATDLLEGFGFTGQKLVTRIGDLSGGERR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHH
RLQLLRLLMDEPNVLLLDEPTNDLDIDTLRLLEDYLDSWPGTLIVVSHDRWFLERVCDVV
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
WALMGDGTVALLPGGISQYLEHRRDRKTGPSKSSRVGSTSRADEPKISAAELRQARKDMD
HHHHCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
RLDRQMGKVRDELAALHEEMATKADDYQALVHLQTKANELDARMTSLEEQWLETADIVED
HHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]