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The map label for this gene is amyC [H]

Identifier: 50842078

GI number: 50842078

Start: 653144

End: 654379

Strand: Direct

Name: amyC [H]

Synonym: PPA0592

Alternate gene names: 50842078

Gene position: 653144-654379 (Clockwise)

Preceding gene: 50842077

Following gene: 50842081

Centisome position: 25.51

GC content: 60.11

Gene sequence:

>1236_bases
ATGGCTTATCGGCCCGGATGGGTTGACCACCTCATTGGGTGGCACGTCTATCCCCTGGGGTTCGTCGGAGCTCCGGCACG
ACTGGAATCTCAGGAGGTGAGTCATCGTCTCGCTCATCTGGGAGCCTGGCTTGACCATGCCGTGGCACTGGGCTGTTCAA
GTCTGGCCTTAGGGCCGGTCTTTTCCTCGGCTAGCCACGGCTACGACACCTTGGACTACTTCACTATCGACCCTCGGCTA
GGCGACGACGATGACTTCGATCACCTGCTTCAGGCCGCCCATGCTCGTGGTCTGTCAGTACTGCTCGACGGGGTGTTCAA
CCACGTCTCGCGTCGCAACCGCATCGTGCAGGATGCGCAGAGTGCTGGGCCAGATTCAGACGCCGGCCGCATGGTTCGCT
GGTGTGCGGGGCGCCTCGACGTTTTCGAGGGTCATAGTGACCTGGTCGCACTCAACCACGACAACCCCGCAGTGCGGGAA
CATGTCACCCGGATCATGAACTATTGGTGCGGTCGCGGTGTTGACGGCTGGCGGCTGGACGCCGCCTATTCCGTCAATCC
TGAGTTCTGGGCTGCGGTGCTGCCCTCGGTGCGAGAGAAGTACCCTGACGTGTGGATCTTCGGTGAAGTTATTCACGGCG
ACTATGCGAGTATCGTTCGAGCCTCGGGGATGGATTCGGTGACCCAGTACGAGTTATGGAAAGGGATCTGGTCCTCTATC
GAGTCTCGTAACTTTTTCGAGCTAGATCATGCTTTGGGCCGCCATAACGAGTTCAGCGATGCCTTCACCCCGATGACCTT
CGTCGGCAACCATGACGTCACCCGTATCGCCTCGAGGGTGGGACAGGACGGCGCAGTTCTCGCAACCGCGATACTCGCCA
CCATTGGAGGTATCCCGCTCATCTATTACGGGGACGAGCTAGCTTATCGTGGAGTCAAAGAAGAGAGGTTCGGAGGCGAC
GACGATATTCGCCCGGTATTCCCCGCCAGCCCGGCGGATTTGTCGAACCTCGGCGCCGACACCCTGCGCGCTCATCAAAG
CCTGCTTGGCTTGCGGCGCCGACATCCGTGGTTGGTGGACGCTCGCACCGAGTCCCTGGATCTCACGAACGAACGCTATG
TCTATCGCACCGGCGTGCCGGGGGTCGAACCTCTTATCGTCGAACTTGATGTGCGCGATGGCTGCTCGGTTCTCATCCGG
GAAGTCGGTCAGGTCGTTTGGTCTAGCGGAGCCTGA

Upstream 100 bases:

>100_bases
TTGTCACCAAGGCGCCTCATGCCGACCTTTCAACGGCCGATCTTCATCACGACTGACATGATGGTGGTAATTGATCGGCC
GTGACAAACGGGGAGGCATC

Downstream 100 bases:

>100_bases
TCCTTGTGACCGGCATCGCCCGGGTCAGTCCCCACCGAAGAGATCCCGGGTGTAGACCTTGTCAGCGACATCGGATAAAT
CCGGTGACATCCGGTTGGCA

Product: alpha-amylase 3

Products: NA

Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MAYRPGWVDHLIGWHVYPLGFVGAPARLESQEVSHRLAHLGAWLDHAVALGCSSLALGPVFSSASHGYDTLDYFTIDPRL
GDDDDFDHLLQAAHARGLSVLLDGVFNHVSRRNRIVQDAQSAGPDSDAGRMVRWCAGRLDVFEGHSDLVALNHDNPAVRE
HVTRIMNYWCGRGVDGWRLDAAYSVNPEFWAAVLPSVREKYPDVWIFGEVIHGDYASIVRASGMDSVTQYELWKGIWSSI
ESRNFFELDHALGRHNEFSDAFTPMTFVGNHDVTRIASRVGQDGAVLATAILATIGGIPLIYYGDELAYRGVKEERFGGD
DDIRPVFPASPADLSNLGADTLRAHQSLLGLRRRHPWLVDARTESLDLTNERYVYRTGVPGVEPLIVELDVRDGCSVLIR
EVGQVVWSSGA

Sequences:

>Translated_411_residues
MAYRPGWVDHLIGWHVYPLGFVGAPARLESQEVSHRLAHLGAWLDHAVALGCSSLALGPVFSSASHGYDTLDYFTIDPRL
GDDDDFDHLLQAAHARGLSVLLDGVFNHVSRRNRIVQDAQSAGPDSDAGRMVRWCAGRLDVFEGHSDLVALNHDNPAVRE
HVTRIMNYWCGRGVDGWRLDAAYSVNPEFWAAVLPSVREKYPDVWIFGEVIHGDYASIVRASGMDSVTQYELWKGIWSSI
ESRNFFELDHALGRHNEFSDAFTPMTFVGNHDVTRIASRVGQDGAVLATAILATIGGIPLIYYGDELAYRGVKEERFGGD
DDIRPVFPASPADLSNLGADTLRAHQSLLGLRRRHPWLVDARTESLDLTNERYVYRTGVPGVEPLIVELDVRDGCSVLIR
EVGQVVWSSGA
>Mature_410_residues
AYRPGWVDHLIGWHVYPLGFVGAPARLESQEVSHRLAHLGAWLDHAVALGCSSLALGPVFSSASHGYDTLDYFTIDPRLG
DDDDFDHLLQAAHARGLSVLLDGVFNHVSRRNRIVQDAQSAGPDSDAGRMVRWCAGRLDVFEGHSDLVALNHDNPAVREH
VTRIMNYWCGRGVDGWRLDAAYSVNPEFWAAVLPSVREKYPDVWIFGEVIHGDYASIVRASGMDSVTQYELWKGIWSSIE
SRNFFELDHALGRHNEFSDAFTPMTFVGNHDVTRIASRVGQDGAVLATAILATIGGIPLIYYGDELAYRGVKEERFGGDD
DIRPVFPASPADLSNLGADTLRAHQSLLGLRRRHPWLVDARTESLDLTNERYVYRTGVPGVEPLIVELDVRDGCSVLIRE
VGQVVWSSGA

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Escherichia coli, GI1790687, Length=411, Percent_Identity=26.5206812652068, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786604, Length=404, Percent_Identity=25, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006046
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.1 [H]

Molecular weight: Translated: 45527; Mature: 45396

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYRPGWVDHLIGWHVYPLGFVGAPARLESQEVSHRLAHLGAWLDHAVALGCSSLALGPV
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSSASHGYDTLDYFTIDPRLGDDDDFDHLLQAAHARGLSVLLDGVFNHVSRRNRIVQDAQ
HCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SAGPDSDAGRMVRWCAGRLDVFEGHSDLVALNHDNPAVREHVTRIMNYWCGRGVDGWRLD
HCCCCCHHHHHHHHHHCHHHEECCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEC
AAYSVNPEFWAAVLPSVREKYPDVWIFGEVIHGDYASIVRASGMDSVTQYELWKGIWSSI
EEEECCHHHHHHHHHHHHHHCCCEEEEHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHH
ESRNFFELDHALGRHNEFSDAFTPMTFVGNHDVTRIASRVGQDGAVLATAILATIGGIPL
CCCCHHHHHHHHCCCCCCHHHCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEE
IYYGDELAYRGVKEERFGGDDDIRPVFPASPADLSNLGADTLRAHQSLLGLRRRHPWLVD
EEECCHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEEE
ARTESLDLTNERYVYRTGVPGVEPLIVELDVRDGCSVLIREVGQVVWSSGA
CCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AYRPGWVDHLIGWHVYPLGFVGAPARLESQEVSHRLAHLGAWLDHAVALGCSSLALGPV
CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSSASHGYDTLDYFTIDPRLGDDDDFDHLLQAAHARGLSVLLDGVFNHVSRRNRIVQDAQ
HCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SAGPDSDAGRMVRWCAGRLDVFEGHSDLVALNHDNPAVREHVTRIMNYWCGRGVDGWRLD
HCCCCCHHHHHHHHHHCHHHEECCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEC
AAYSVNPEFWAAVLPSVREKYPDVWIFGEVIHGDYASIVRASGMDSVTQYELWKGIWSSI
EEEECCHHHHHHHHHHHHHHCCCEEEEHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHH
ESRNFFELDHALGRHNEFSDAFTPMTFVGNHDVTRIASRVGQDGAVLATAILATIGGIPL
CCCCHHHHHHHHCCCCCCHHHCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEE
IYYGDELAYRGVKEERFGGDDDIRPVFPASPADLSNLGADTLRAHQSLLGLRRRHPWLVD
EEECCHHHHCCCCHHHCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCEEEE
ARTESLDLTNERYVYRTGVPGVEPLIVELDVRDGCSVLIREVGQVVWSSGA
CCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2458257 [H]