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The map label for this gene is pecS [H]

Identifier: 50842012

GI number: 50842012

Start: 582048

End: 582587

Strand: Direct

Name: pecS [H]

Synonym: PPA0528

Alternate gene names: 50842012

Gene position: 582048-582587 (Clockwise)

Preceding gene: 50842011

Following gene: 50842014

Centisome position: 22.73

GC content: 62.04

Gene sequence:

>540_bases
ATGACGAGGCCGCTACATCAGAACGCTGTGCACCAGAATTCGCCACGGAAGGACGCGGTCGACGGCATCATTGCGGCGTG
GGCTAGGGAGCGTCCTGACTTGCCCGTCGAGGTAATGGAGGTGTGGTCGCGCGTCACGAGGCTCGCCCGCCGCTTGGATC
GTGACCGCGCCAAAGCGTTCTCCCAATGGGACCTTGAGGGCTGGGAATTCGACGTGCTAGCAGCGCTACGACGCTCTGGT
GAGCCCTATCAACTCAGCCCGGGTCAGCTCCTTAACGAGCTCGAGGTGGCATCGGGGACGATGACTAACCGCATTACAAG
GCTGTCAAATCGCGGTCTGGTGCGTCGTCTTCCCCATCCCAAGGACGGGCGCGGGGTCATCGTCGAACTTACCGATGAGG
GGCGCGATCGGGTCGATGGAGCCCTGGCAGCCCTGTTGGAGTCCGAGGGACGTTTGTTCGACTCGATGGATGCCCAGGTC
GTCGAACAGGTGGGTCAAGGTTTACGTGCCGTGCTGGCCCGTCAAGAGGAACTGGACTGA

Upstream 100 bases:

>100_bases
GCGCTGCTGTGTCCAATCTGCCTCAGGTTCATCGCACCCGAACTGCCCGCGGTCCAGCTGCGGGAGCGCAGCTCCTGCCT
GGCCCGGTGGGGAGCTTTGC

Downstream 100 bases:

>100_bases
AGGCTTTCTCTTTCGGCGTGACGGCTGAGATGTGGGCTGCCCGACAGATGAGCAAGCCCGTTGAAAGTCAGATCAACCAG
ATGGGCGGCAACGACCTCTT

Product: MarR family regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MTRPLHQNAVHQNSPRKDAVDGIIAAWARERPDLPVEVMEVWSRVTRLARRLDRDRAKAFSQWDLEGWEFDVLAALRRSG
EPYQLSPGQLLNELEVASGTMTNRITRLSNRGLVRRLPHPKDGRGVIVELTDEGRDRVDGALAALLESEGRLFDSMDAQV
VEQVGQGLRAVLARQEELD

Sequences:

>Translated_179_residues
MTRPLHQNAVHQNSPRKDAVDGIIAAWARERPDLPVEVMEVWSRVTRLARRLDRDRAKAFSQWDLEGWEFDVLAALRRSG
EPYQLSPGQLLNELEVASGTMTNRITRLSNRGLVRRLPHPKDGRGVIVELTDEGRDRVDGALAALLESEGRLFDSMDAQV
VEQVGQGLRAVLARQEELD
>Mature_178_residues
TRPLHQNAVHQNSPRKDAVDGIIAAWARERPDLPVEVMEVWSRVTRLARRLDRDRAKAFSQWDLEGWEFDVLAALRRSGE
PYQLSPGQLLNELEVASGTMTNRITRLSNRGLVRRLPHPKDGRGVIVELTDEGRDRVDGALAALLESEGRLFDSMDAQVV
EQVGQGLRAVLARQEELD

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 20198; Mature: 20067

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPLHQNAVHQNSPRKDAVDGIIAAWARERPDLPVEVMEVWSRVTRLARRLDRDRAKAF
CCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SQWDLEGWEFDVLAALRRSGEPYQLSPGQLLNELEVASGTMTNRITRLSNRGLVRRLPHP
HHCCCCCCHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCCCC
KDGRGVIVELTDEGRDRVDGALAALLESEGRLFDSMDAQVVEQVGQGLRAVLARQEELD
CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRPLHQNAVHQNSPRKDAVDGIIAAWARERPDLPVEVMEVWSRVTRLARRLDRDRAKAF
CCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
SQWDLEGWEFDVLAALRRSGEPYQLSPGQLLNELEVASGTMTNRITRLSNRGLVRRLPHP
HHCCCCCCHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCCCC
KDGRGVIVELTDEGRDRVDGALAALLESEGRLFDSMDAQVVEQVGQGLRAVLARQEELD
CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]