Click here to switch to the map view.

The map label for this gene is xylR [H]

Identifier: 50841575

GI number: 50841575

Start: 94313

End: 95524

Strand: Reverse

Name: xylR [H]

Synonym: PPA0084

Alternate gene names: 50841575

Gene position: 95524-94313 (Counterclockwise)

Preceding gene: 50841582

Following gene: 50841574

Centisome position: 3.73

GC content: 63.45

Gene sequence:

>1212_bases
ATGCATTCAGCAGTAGTGGGTGCGGAACCCATCGATCATGGCACGATGAGGACGATTAATCTTGCCCTCCTGCTTGGAAC
CCTGCGATCAGGACCGATCTCCCGCGCGGAGTTATCCCGACGGACCCATCTATCCAAAGCCAGCATCACCAGCCTGGCCG
CCGAGCTGGCGGCGAGGGGGCTCGTGCGCGAGGGAAGCCCGGACCGCAACGGCACGGTGGGGCGCCCCGGCACCATGCTT
ACGCTGGAAGGTGCGCGTGTGTGCGGTGTCGGGCTGGAGATCAACGCCGAGTACCTCGCCGTGTGCGTTGTAGACCTGTG
CGGGACAGTGCTATACGACCGGGCTCAGCCATTCGACGTGGCTTCGCTACCCATCTCCGATGTCCTCGACGAAGTTGCCG
GGATCATGCGGGATACCTTGGAACAACTCCATAGCGCACGACGGCACGTGGCCCAGGTCATGGTGTCCGCCCCGGGTGTG
ATCAAGCAACCCGCAGGTACCGTCCACCTGGCTTCGAACCTCGGTTGGCGCGACGTCCCTTTGCGTTCTCAGCTGCTCCA
GCGACTGGACGCCGACATCAGCTTGCAGGTGGAGAACGATGCGAAACTCGCAGCGGTCGCCGAGTACCGCAGATATGAGG
ACTCCGACGTGCGGGACCTGGTCTACCTATCCGGGGACATCGGTGTCGGCGCTGGTATCATCGCGGCTGGCCAGCTGATG
CGCGGCTGGTCGGGATTTTCTGGAGAAGTCGGGCACCTGCACCTCGACCCCCGCAACCTACCCTGCCACTGTGGCCGCAC
AGGCTGTTGGGAGGCGCGCGTCGGCCTACCCGAGTTCCTGGCGCATACCGGGGACCGACTGGGCGCCCAACCTATCGACC
GGTTACTCACCCAAATTCAGGATCGTGCAACCCGTGGGGACCAGCAGGTCCTCAATGCCCTCGATGACCTGGCTACCAGC
CTGGCCGAAGGCCTCAGCGTGGTCATCGACATGCTCAATCCCCGTGTGGTCGTCCTGGGCGGCTACTTCAGCTGGTTCAC
TGACTTCCTCATTCCGCCGATAGCGGCCGATCTGACCGCCCGCCGACTGGATCCAGGCGCGGGTGCGCTGCTCGCCGGTG
CACAACTCGGCATGGTCTCTTCCGCTCATGGGGCTGCCCTGACGGCCCTGGACAGTGTATTCGTCAACCCTTTATCAGTT
CCTCAATGTTGA

Upstream 100 bases:

>100_bases
AACGTGCCACGTCCGACAGGAAGCGCCAGTCGAGCTAAGCGTTTTGTCAGTCACTCCGGCAGGTACCCTATCGAGATAGG
ACGGCAGAGGGGAGGGGGAC

Downstream 100 bases:

>100_bases
CGCCATCACCTCCTCTTCCTCAAGCACCAGGCACCCAATCCGGGACCGACGGCCCGGAGAGCATTGACAGTCGCGCGGCC
GCATGTCATATTTTCGGCAG

Product: ROK family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MHSAVVGAEPIDHGTMRTINLALLLGTLRSGPISRAELSRRTHLSKASITSLAAELAARGLVREGSPDRNGTVGRPGTML
TLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDVASLPISDVLDEVAGIMRDTLEQLHSARRHVAQVMVSAPGV
IKQPAGTVHLASNLGWRDVPLRSQLLQRLDADISLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLM
RGWSGFSGEVGHLHLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLGAQPIDRLLTQIQDRATRGDQQVLNALDDLATS
LAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTARRLDPGAGALLAGAQLGMVSSAHGAALTALDSVFVNPLSV
PQC

Sequences:

>Translated_403_residues
MHSAVVGAEPIDHGTMRTINLALLLGTLRSGPISRAELSRRTHLSKASITSLAAELAARGLVREGSPDRNGTVGRPGTML
TLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDVASLPISDVLDEVAGIMRDTLEQLHSARRHVAQVMVSAPGV
IKQPAGTVHLASNLGWRDVPLRSQLLQRLDADISLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLM
RGWSGFSGEVGHLHLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLGAQPIDRLLTQIQDRATRGDQQVLNALDDLATS
LAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTARRLDPGAGALLAGAQLGMVSSAHGAALTALDSVFVNPLSV
PQC
>Mature_403_residues
MHSAVVGAEPIDHGTMRTINLALLLGTLRSGPISRAELSRRTHLSKASITSLAAELAARGLVREGSPDRNGTVGRPGTML
TLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDVASLPISDVLDEVAGIMRDTLEQLHSARRHVAQVMVSAPGV
IKQPAGTVHLASNLGWRDVPLRSQLLQRLDADISLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLM
RGWSGFSGEVGHLHLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLGAQPIDRLLTQIQDRATRGDQQVLNALDDLATS
LAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTARRLDPGAGALLAGAQLGMVSSAHGAALTALDSVFVNPLSV
PQC

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=343, Percent_Identity=24.198250728863, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1787878, Length=343, Percent_Identity=24.7813411078717, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87082127, Length=207, Percent_Identity=24.6376811594203, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87082230, Length=263, Percent_Identity=26.9961977186312, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787363, Length=219, Percent_Identity=29.2237442922374, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 42815; Mature: 42815

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSAVVGAEPIDHGTMRTINLALLLGTLRSGPISRAELSRRTHLSKASITSLAAELAARG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVREGSPDRNGTVGRPGTMLTLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDV
HHCCCCCCCCCCCCCCCCEEEECCCEEEEECEEECHHHHHHHHHHHHHHHHHCCCCCCCC
ASLPISDVLDEVAGIMRDTLEQLHSARRHVAQVMVSAPGVIKQPAGTVHLASNLGWRDVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCC
LRSQLLQRLDADISLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLM
HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
RGWSGFSGEVGHLHLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLGAQPIDRLLTQIQ
HCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHH
DRATRGDQQVLNALDDLATSLAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCHHHHHHH
RRLDPGAGALLAGAQLGMVSSAHGAALTALDSVFVNPLSVPQC
HHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHSAVVGAEPIDHGTMRTINLALLLGTLRSGPISRAELSRRTHLSKASITSLAAELAARG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVREGSPDRNGTVGRPGTMLTLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDV
HHCCCCCCCCCCCCCCCCEEEECCCEEEEECEEECHHHHHHHHHHHHHHHHHCCCCCCCC
ASLPISDVLDEVAGIMRDTLEQLHSARRHVAQVMVSAPGVIKQPAGTVHLASNLGWRDVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCC
LRSQLLQRLDADISLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLM
HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHH
RGWSGFSGEVGHLHLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLGAQPIDRLLTQIQ
HCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHH
DRATRGDQQVLNALDDLATSLAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCHHHHHHH
RRLDPGAGALLAGAQLGMVSSAHGAALTALDSVFVNPLSVPQC
HHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]