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The map label for this gene is deoC2 [H]

Identifier: 50365454

GI number: 50365454

Start: 744910

End: 745548

Strand: Reverse

Name: deoC2 [H]

Synonym: Mfl639

Alternate gene names: 50365454

Gene position: 745548-744910 (Counterclockwise)

Preceding gene: 50365455

Following gene: 50365453

Centisome position: 93.99

GC content: 24.88

Gene sequence:

>639_bases
ATGAAATTAAATAATTATATAGATGCAACTCTTTTAAAACCTGATGCAACTTTAATTGAAATTAATAAGTTTGTTGATTT
ATGTATAATTAAAAATGTTAGATGTATTTGCGTTCATATTTCAAGGATAGCAGTCGTTAAAGAAATAATTAAGAATACTA
AAATTAGCATATCTGGAACAGTTTCCTTTCCTTTTGGAAATGCAACAACTAAATTAAAAATTAATGAAATAAAAGAATGC
TTAAAATTAGGTGCAAATGAAATTGATTTTGTTGCAAATATTGGGAATATTAAAGATCATGATTGAGAAAAAGTAAATAG
TGAATTTCAAAAAATAAGAAATTCTTTTAAAGACATAATTATTAAAGTAATTTTTGAAACTTGCCTTTTGACAGAAGAAG
AAATTATTAAATGCTGTCAGATTGCGGTTAAAAATAAATTAGATTTTGTTAAGACATCAACAGGGTATTCTAAAATGGGA
GCAACTATAGAACATGTAAAATTAATGAAAAAAATTGTAAATAATGAATGTAAGGTTAAAGCTTCTGGTGGTATCAAAAC
AAAAAACTTTGCTTTAGAATTGGTTGAAGCAGGAGCAGAAAGAATTGGAACAAGTTCAATATCAGAAGTATTAAACTAA

Upstream 100 bases:

>100_bases
AAAGAAATCTTAGATGCAGGAGCTGACATTGTTGTGGTAGGAGCTTTTGTAAACGTAGAAAATAATAAATTAAAAGGGCA
ATTTGAAAAAATTAAAAATT

Downstream 100 bases:

>100_bases
AAAAATCGCGAAAGCGGTTTTTTATTTGTGCTTTTAAATAAAAATGTTATATAATTTTTAAGTACTGAAAAAGTATCTAA
ATGAAAACATAGTGTGAAAG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase 2; DERA 2; Deoxyriboaldolase 2 [H]

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKLNNYIDATLLKPDATLIEINKFVDLCIIKNVRCICVHISRIAVVKEIIKNTKISISGTVSFPFGNATTKLKINEIKEC
LKLGANEIDFVANIGNIKDHDWEKVNSEFQKIRNSFKDIIIKVIFETCLLTEEEIIKCCQIAVKNKLDFVKTSTGYSKMG
ATIEHVKLMKKIVNNECKVKASGGIKTKNFALELVEAGAERIGTSSISEVLN

Sequences:

>Translated_212_residues
MKLNNYIDATLLKPDATLIEINKFVDLCIIKNVRCICVHISRIAVVKEIIKNTKISISGTVSFPFGNATTKLKINEIKEC
LKLGANEIDFVANIGNIKDHD*EKVNSEFQKIRNSFKDIIIKVIFETCLLTEEEIIKCCQIAVKNKLDFVKTSTGYSKMG
ATIEHVKLMKKIVNNECKVKASGGIKTKNFALELVEAGAERIGTSSISEVLN
>Mature_212_residues
MKLNNYIDATLLKPDATLIEINKFVDLCIIKNVRCICVHISRIAVVKEIIKNTKISISGTVSFPFGNATTKLKINEIKEC
LKLGANEIDFVANIGNIKDHD*EKVNSEFQKIRNSFKDIIIKVIFETCLLTEEEIIKCCQIAVKNKLDFVKTSTGYSKMG
ATIEHVKLMKKIVNNECKVKASGGIKTKNFALELVEAGAERIGTSSISEVLN

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790841, Length=213, Percent_Identity=26.7605633802817, Blast_Score=71, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17533015, Length=214, Percent_Identity=28.9719626168224, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23462; Mature: 23462

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNNYIDATLLKPDATLIEINKFVDLCIIKNVRCICVHISRIAVVKEIIKNTKISISGT
CCCCCCCCEEEECCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
VSFPFGNATTKLKINEIKECLKLGANEIDFVANIGNIKDHDEKVNSEFQKIRNSFKDIII
EEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KVIFETCLLTEEEIIKCCQIAVKNKLDFVKTSTGYSKMGATIEHVKLMKKIVNNECKVKA
HHHHHHHHCCHHHHHHHHHHHHHCCHHHEECCCCHHHHCCHHHHHHHHHHHHCCCCEEEE
SGGIKTKNFALELVEAGAERIGTSSISEVLN
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHC
>Mature Secondary Structure
MKLNNYIDATLLKPDATLIEINKFVDLCIIKNVRCICVHISRIAVVKEIIKNTKISISGT
CCCCCCCCEEEECCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE
VSFPFGNATTKLKINEIKECLKLGANEIDFVANIGNIKDHDEKVNSEFQKIRNSFKDIII
EEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KVIFETCLLTEEEIIKCCQIAVKNKLDFVKTSTGYSKMGATIEHVKLMKKIVNNECKVKA
HHHHHHHHCCHHHHHHHHHHHHHCCHHHEECCCCHHHHCCHHHHHHHHHHHHCCCCEEEE
SGGIKTKNFALELVEAGAERIGTSSISEVLN
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA