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The map label for this gene is scpB [H]

Identifier: 50365366

GI number: 50365366

Start: 641983

End: 642612

Strand: Reverse

Name: scpB [H]

Synonym: Mfl549

Alternate gene names: 50365366

Gene position: 642612-641983 (Counterclockwise)

Preceding gene: 50365367

Following gene: 50365365

Centisome position: 81.01

GC content: 26.03

Gene sequence:

>630_bases
ATGAATAGCAATATTAAAGCAATAGTTGAGGGTTTATTATTCGTATATGGTGATGATGGTATTAGTTTACTAGACTTACA
AAATGTACTTGAAGATGTTAGACCAGTTACAATCCAAGAAGCTATATTAGAATTAGAAAAAAAATATTCTTCAGATCCTG
ATTGTGCTTTTTCAATTCAAAAATTTGGAAAAAATAAATATAGATTACAAACTAAACCAGAATTGCACGAATACTTTGCT
AAATTAGAATTAGAAGTAAATAATTCAAGATTATCAAATTCAAGTATCGAAGTTTTATCAATCATTGTTTATAAAGGTCC
TATTTCAAAACATGATATTGAGTTGATAAGACAAGCAGAATGTTCATACCAAATTTATAGATTAAGACAAAAAAAATTAA
TTAAAGCAGTTGGTAAAACTTCAACAGGTGCAAATCTTTATACAATAACAGATAACTTTTTTAAATTATTTAATATAACA
GGTGGATTTGAAGCTTTACCTCAAATAGATTTTGCTTCATATAAAAATCAAGATGAAGAAAACAATTTTGAAGAAGAAAT
TAAAGTTACTGAAGAAATGATCTCAGAAGAAGATGTTTTTGAGGAAGATGACTCAGAAGGAATGTTTTAA

Upstream 100 bases:

>100_bases
GCTGTTATTAATCAAAAGAATGATACATTAGAATTTAGATTCACATCTGAAGCTTTAGCTGATGAATCTGTATTAAGAAG
AATAGAAGAGGTAGAAGAAT

Downstream 100 bases:

>100_bases
TGGAAAGATTACAGAAAATAATTTCAGCTAGGGGTGTTACTTCAAGAAGAAACGCTGAAAAATTAATAGTTGAGGGAAAA
GTTAAAGTAAATGGTGTAGT

Product: chromosomal segregation/condensation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MNSNIKAIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNKYRLQTKPELHEYFA
KLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIYRLRQKKLIKAVGKTSTGANLYTITDNFFKLFNIT
GGFEALPQIDFASYKNQDEENNFEEEIKVTEEMISEEDVFEEDDSEGMF

Sequences:

>Translated_209_residues
MNSNIKAIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNKYRLQTKPELHEYFA
KLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIYRLRQKKLIKAVGKTSTGANLYTITDNFFKLFNIT
GGFEALPQIDFASYKNQDEENNFEEEIKVTEEMISEEDVFEEDDSEGMF
>Mature_209_residues
MNSNIKAIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQKFGKNKYRLQTKPELHEYFA
KLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAECSYQIYRLRQKKLIKAVGKTSTGANLYTITDNFFKLFNIT
GGFEALPQIDFASYKNQDEENNFEEEIKVTEEMISEEDVFEEDDSEGMF

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 24005; Mature: 24005

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNIKAIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQ
CCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
KFGKNKYRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAE
HHCCCCEEECCCHHHHHHHHHHEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHH
CSYQIYRLRQKKLIKAVGKTSTGANLYTITDNFFKLFNITGGFEALPQIDFASYKNQDEE
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHEEHHCCCCHHHCCCCHHHHHCCCCCC
NNFEEEIKVTEEMISEEDVFEEDDSEGMF
CCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNSNIKAIVEGLLFVYGDDGISLLDLQNVLEDVRPVTIQEAILELEKKYSSDPDCAFSIQ
CCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
KFGKNKYRLQTKPELHEYFAKLELEVNNSRLSNSSIEVLSIIVYKGPISKHDIELIRQAE
HHCCCCEEECCCHHHHHHHHHHEEEECCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHH
CSYQIYRLRQKKLIKAVGKTSTGANLYTITDNFFKLFNITGGFEALPQIDFASYKNQDEE
HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHEEHHCCCCHHHCCCCHHHHHCCCCCC
NNFEEEIKVTEEMISEEDVFEEDDSEGMF
CCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566 [H]