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The map label for this gene is psd

Identifier: 50086514

GI number: 50086514

Start: 3485365

End: 3486222

Strand: Reverse

Name: psd

Synonym: ACIAD3560

Alternate gene names: 50086514

Gene position: 3486222-3485365 (Counterclockwise)

Preceding gene: 50086515

Following gene: 50086509

Centisome position: 96.88

GC content: 43.82

Gene sequence:

>858_bases
TTGAGCTTTACATCACGATTAAAAAAAGACCTATTTATTAAAGCACAATCGCTCGTTCCACAGCATCAGCTCAGCCGGGT
GGTCGGTAAGGTTGCCGAAAGCGAAAATATTCTGATTAAAGCTGCTGTTATTCAGGCATTTAAAACAAAATATGGTATTG
ACCTTTCTATTGCCGAGCAGGCAGATGCCTTAAAATATAAATCGTTTAATGAATTTTTTACACGTGCACTGAAAGAAGGT
GTACGAGTAGTCGATTCTGCGACTGGAAGTATTGTCTCTCCTGCAGATGGTGCGATTTCGCAACTTGGTACTATCCATGA
TGGTGAGGTATTTCAGGCAAAAGGGCAGAGTTTTTCCGTTGAAAAATTGATTGGTGATCCGCAATTGGCCCAGCCATTTA
AGCAGGGGCAATTTGCGACGGTTTACTTGTCACCGCGTGATTATCATCGGGTTCATATGCCATTTACGGGAACATTAACC
GAAACGCTCTATATTCCAGGCGAATTATTTTCGGTAAATCAGGTCACGGCTGAAAATATTCCAGGCCTATTTGCCCGTAA
CGAACGCATGGTGTGTTTGTTTGATACCGAACTAGGCCGCATGGCTGTTGTTTTGGTGGGTGCTATGATTGTGGCAGGTA
TCGAAACGGTAGTGACTGGAAAAGTGAAACCCACAGGCCGTCTCGAACTCAATCATCACGACGTGACCTTGCAAAAGGGC
GATGAGTTGGGCCGTTTCTACTTAGGTTCAACCGCGATTATCTTGTTTGAAAAAGACAAAATGGTTTGGGATCAGCAGTT
CAAAGCCAATTCGATTGTGGTGATGGGTGAAAAACTGGGTCAATCTACGAACCCGTAA

Upstream 100 bases:

>100_bases
TGGCAAGACTATTGGGATGGTCAGTTCGTGCATATGATGGCGCTTGGAGTGAATGGGGCAATCGCCTCGATAGTCCTGTG
ATTACCGGAGAACAGCCATT

Downstream 100 bases:

>100_bases
ATCTAAATAAAAAATGCCCGATAAGTGTTCGGGCATTTTTTATATTGGCTTCAAATAGATGAGTTCTGATTAGGGCGCGA
TTTTAACTGCTCTATCCATG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSFTSRLKKDLFIKAQSLVPQHQLSRVVGKVAESENILIKAAVIQAFKTKYGIDLSIAEQADALKYKSFNEFFTRALKEG
VRVVDSATGSIVSPADGAISQLGTIHDGEVFQAKGQSFSVEKLIGDPQLAQPFKQGQFATVYLSPRDYHRVHMPFTGTLT
ETLYIPGELFSVNQVTAENIPGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVVTGKVKPTGRLELNHHDVTLQKG
DELGRFYLGSTAIILFEKDKMVWDQQFKANSIVVMGEKLGQSTNP

Sequences:

>Translated_285_residues
MSFTSRLKKDLFIKAQSLVPQHQLSRVVGKVAESENILIKAAVIQAFKTKYGIDLSIAEQADALKYKSFNEFFTRALKEG
VRVVDSATGSIVSPADGAISQLGTIHDGEVFQAKGQSFSVEKLIGDPQLAQPFKQGQFATVYLSPRDYHRVHMPFTGTLT
ETLYIPGELFSVNQVTAENIPGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVVTGKVKPTGRLELNHHDVTLQKG
DELGRFYLGSTAIILFEKDKMVWDQQFKANSIVVMGEKLGQSTNP
>Mature_284_residues
SFTSRLKKDLFIKAQSLVPQHQLSRVVGKVAESENILIKAAVIQAFKTKYGIDLSIAEQADALKYKSFNEFFTRALKEGV
RVVDSATGSIVSPADGAISQLGTIHDGEVFQAKGQSFSVEKLIGDPQLAQPFKQGQFATVYLSPRDYHRVHMPFTGTLTE
TLYIPGELFSVNQVTAENIPGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVVTGKVKPTGRLELNHHDVTLQKGD
ELGRFYLGSTAIILFEKDKMVWDQQFKANSIVVMGEKLGQSTNP

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=297, Percent_Identity=30.3030303030303, Blast_Score=122, Evalue=3e-28,
Organism=Escherichia coli, GI1790604, Length=278, Percent_Identity=46.0431654676259, Blast_Score=249, Evalue=2e-67,
Organism=Caenorhabditis elegans, GI71980843, Length=256, Percent_Identity=29.296875, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71980840, Length=256, Percent_Identity=29.296875, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6321609, Length=255, Percent_Identity=30.9803921568627, Blast_Score=113, Evalue=4e-26,
Organism=Saccharomyces cerevisiae, GI6324160, Length=164, Percent_Identity=32.9268292682927, Blast_Score=73, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24649526, Length=320, Percent_Identity=30.3125, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24649528, Length=320, Percent_Identity=30.3125, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24649524, Length=320, Percent_Identity=30.3125, Blast_Score=121, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_ACIAD (Q6F6W3)

Other databases:

- EMBL:   CR543861
- RefSeq:   YP_048024.1
- STRING:   Q6F6W3
- GeneID:   2879334
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD3560
- NMPDR:   fig|62977.3.peg.3217
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   Q6F6W3
- ProtClustDB:   PRK00044
- BioCyc:   ASP62977:ACIAD3560-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 31371; Mature: 31239

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTSRLKKDLFIKAQSLVPQHQLSRVVGKVAESENILIKAAVIQAFKTKYGIDLSIAEQ
CCHHHHHHHHHEEEHHHCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCEEEECCC
ADALKYKSFNEFFTRALKEGVRVVDSATGSIVSPADGAISQLGTIHDGEVFQAKGQSFSV
CHHHHHHHHHHHHHHHHHHHHHEECCCCCCEECCCCHHHHHHCCCCCCCEEEECCCCEEH
EKLIGDPQLAQPFKQGQFATVYLSPRDYHRVHMPFTGTLTETLYIPGELFSVNQVTAENI
HHHCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCEEECCCCHHHCC
PGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVVTGKVKPTGRLELNHHDVTLQKG
CCCEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCEEEEECC
DELGRFYLGSTAIILFEKDKMVWDQQFKANSIVVMGEKLGQSTNP
CCCCEEEECCEEEEEEECCCCHHCCCCCCCEEEEEEHHCCCCCCC
>Mature Secondary Structure 
SFTSRLKKDLFIKAQSLVPQHQLSRVVGKVAESENILIKAAVIQAFKTKYGIDLSIAEQ
CHHHHHHHHHEEEHHHCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCEEEECCC
ADALKYKSFNEFFTRALKEGVRVVDSATGSIVSPADGAISQLGTIHDGEVFQAKGQSFSV
CHHHHHHHHHHHHHHHHHHHHHEECCCCCCEECCCCHHHHHHCCCCCCCEEEECCCCEEH
EKLIGDPQLAQPFKQGQFATVYLSPRDYHRVHMPFTGTLTETLYIPGELFSVNQVTAENI
HHHCCCCHHHHHHHCCCEEEEEECCCCCEEEECCCCCCCEEEEEECCCEEECCCCHHHCC
PGLFARNERMVCLFDTELGRMAVVLVGAMIVAGIETVVTGKVKPTGRLELNHHDVTLQKG
CCCEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEECCCEEEEECC
DELGRFYLGSTAIILFEKDKMVWDQQFKANSIVVMGEKLGQSTNP
CCCCEEEECCEEEEEEECCCCHHCCCCCCCEEEEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA