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The map label for this gene is yjgF [C]

Identifier: 50086310

GI number: 50086310

Start: 3232037

End: 3232420

Strand: Direct

Name: yjgF [C]

Synonym: ACIAD3327

Alternate gene names: 50086310

Gene position: 3232037-3232420 (Clockwise)

Preceding gene: 50086309

Following gene: 50086311

Centisome position: 89.81

GC content: 39.32

Gene sequence:

>384_bases
ATGTCACGCCAAGTTATTCATACTGAAAATGCGCCTGCAGCTATTGGTACATATTCTCAAGCCATTCTGATTGATAACAC
TTTATATTTATCAGGCCAAATTGGTTTAGATCCTTATAGTATGGAACTGGTCGATGGAATCGAAGCACAAATCCGACGTG
TATTTGATAATTTAAAAGCAGTGTGTGAAGCTGCTGGTGGCACACTCGCCGATATTGCCAAGCTCAATATTTTTATGACA
GATCTTTCACATTTCCAACTGGTCAATCAAATTATGGGAGAGTATTTTGCTCAACCTTATCCTGCTCGTGCAGCATTAGG
GGTTGCCAGTTTACCTAAAGGTGCTTTGGTTGAAATGGACGGAATTGTCTTTATTAATCAGTAA

Upstream 100 bases:

>100_bases
TCTGTAAAAATTAAAGTAAGTTAATCAATTATATCGATGATACTTTTGTCATGTGGTTTCATCGATTATGATGTTTTTAT
ATAGAGAAAAGGAGTAATCG

Downstream 100 bases:

>100_bases
ATTAAAATTATTTAATTAACACCACCTATTGCGTGGTGTTTTTTTATTCAAAATACCAATCATAGATTATTTTTTTACAA
ATGAATTTCATTGACAAACG

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSRQVIHTENAPAAIGTYSQAILIDNTLYLSGQIGLDPYSMELVDGIEAQIRRVFDNLKAVCEAAGGTLADIAKLNIFMT
DLSHFQLVNQIMGEYFAQPYPARAALGVASLPKGALVEMDGIVFINQ

Sequences:

>Translated_127_residues
MSRQVIHTENAPAAIGTYSQAILIDNTLYLSGQIGLDPYSMELVDGIEAQIRRVFDNLKAVCEAAGGTLADIAKLNIFMT
DLSHFQLVNQIMGEYFAQPYPARAALGVASLPKGALVEMDGIVFINQ
>Mature_126_residues
SRQVIHTENAPAAIGTYSQAILIDNTLYLSGQIGLDPYSMELVDGIEAQIRRVFDNLKAVCEAAGGTLADIAKLNIFMTD
LSHFQLVNQIMGEYFAQPYPARAALGVASLPKGALVEMDGIVFINQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=42.9752066115703, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082396, Length=122, Percent_Identity=40.9836065573771, Blast_Score=97, Evalue=2e-22,
Organism=Escherichia coli, GI87082213, Length=123, Percent_Identity=34.9593495934959, Blast_Score=91, Evalue=3e-20,
Organism=Escherichia coli, GI1787245, Length=128, Percent_Identity=32.03125, Blast_Score=73, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=45.0819672131148, Blast_Score=123, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI71982068, Length=127, Percent_Identity=43.3070866141732, Blast_Score=123, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=45.0819672131148, Blast_Score=122, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6322138, Length=117, Percent_Identity=35.042735042735, Blast_Score=84, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=39, Blast_Score=77, Evalue=7e-16,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=38.8429752066116, Blast_Score=92, Evalue=9e-20,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13746; Mature: 13615

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRQVIHTENAPAAIGTYSQAILIDNTLYLSGQIGLDPYSMELVDGIEAQIRRVFDNLKA
CCCCEEECCCCCCCCCCCCEEEEEECEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VCEAAGGTLADIAKLNIFMTDLSHFQLVNQIMGEYFAQPYPARAALGVASLPKGALVEMD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHCCCCCCEEEEC
GIVFINQ
CEEEEEC
>Mature Secondary Structure 
SRQVIHTENAPAAIGTYSQAILIDNTLYLSGQIGLDPYSMELVDGIEAQIRRVFDNLKA
CCCEEECCCCCCCCCCCCEEEEEECEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VCEAAGGTLADIAKLNIFMTDLSHFQLVNQIMGEYFAQPYPARAALGVASLPKGALVEMD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHCCCCCCEEEEC
GIVFINQ
CEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]