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The map label for this gene is ppdD [C]

Identifier: 50086305

GI number: 50086305

Start: 3226876

End: 3227322

Strand: Reverse

Name: ppdD [C]

Synonym: ACIAD3321

Alternate gene names: 50086305

Gene position: 3227322-3226876 (Counterclockwise)

Preceding gene: 50086306

Following gene: 50086304

Centisome position: 89.68

GC content: 42.28

Gene sequence:

>447_bases
ATGACAAAAATGAACGGATTTACCCTCATAGAATTATTAGTCACCATTGCGGTTATTGCGATATTAGCAACGATTGCAGT
GCCGTCTTTTAACAGTATTTTAAACAATCAGAAACTTAATGCATCTACCCGTGAATTAATGTCCAAGATTGCAGAAGCCA
GAACACAAGCGGTGACATTACGTCAAACGACGGGGGTCTGTTTAAGTACGGTCAGTGACTGTGCGAGTGCGCTTTCTATC
ACGACCAATCAGACCAATCGTGTTTATATCGCACAACTTGAAAAGAATGTCGTCGCGGGTACAGGTTCTGCCACTCAAAT
TGCTTTTAGAGTAGAGGGCATCCCGATCACCACTGCAAAATTTACCTTAACACGAAATGGTCAATCTCGCTGTGTGGAAG
TAGGGATTACAGGTGATACCTATTATAAAGAAGGAGCCTGTACATGA

Upstream 100 bases:

>100_bases
GATGAGTGTCACTCATCCGCTTTTTTATGCACTTAATCTTGATTGTATTGGTTATGTAAAAAAATAAGTTAAGCTAGAAT
AAGACGGGGAGTGGAACTTT

Downstream 100 bases:

>100_bases
GCAAGATGAGAGCACAGCGTGGTGTGGGGATGGTCGAGGTTTTGGTGGCGCTGCTGTTGCTGGCAATAGGTGTACTTGGA
TTTACCGCCTTACAATTACG

Product: type 4 fimbrial biogenesis protein (FimU)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTTGVCLSTVSDCASALSI
TTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAKFTLTRNGQSRCVEVGITGDTYYKEGACT

Sequences:

>Translated_148_residues
MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTTGVCLSTVSDCASALSI
TTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAKFTLTRNGQSRCVEVGITGDTYYKEGACT
>Mature_147_residues
TKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTTGVCLSTVSDCASALSIT
TNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAKFTLTRNGQSRCVEVGITGDTYYKEGACT

Specific function: Not Yet Known. [C]

COG id: COG4970

COG function: function code NU; Tfp pilus assembly protein FimT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15781; Mature: 15650

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEE
RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK
HHHCCHHHHHHHHHHHHHEEECCCCCEEEEEEECCCEEECCCCCEEEEEEECCEEEEEEE
FTLTRNGQSRCVEVGITGDTYYKEGACT
EEEEECCCCEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure 
TKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHEEEE
RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK
HHHCCHHHHHHHHHHHHHEEECCCCCEEEEEEECCCEEECCCCCEEEEEEECCEEEEEEE
FTLTRNGQSRCVEVGITGDTYYKEGACT
EEEEECCCCEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA