Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 50086105

GI number: 50086105

Start: 3022178

End: 3024223

Strand: Reverse

Name: yciR [C]

Synonym: ACIAD3099

Alternate gene names: 50086105

Gene position: 3024223-3022178 (Counterclockwise)

Preceding gene: 50086106

Following gene: 50086104

Centisome position: 84.04

GC content: 38.61

Gene sequence:

>2046_bases
ATGGAGCACATGGATTACGATATTTCGCTGGTGATCGGTTCAATTGTTTTGGCAGTGATTATCTGTTTTTTTGCAATTTC
GCTGGAACAACTAATTTTTAAACAGCGTTATGAGCGTTATCAGACATTAATTCTAATTGTTAGTGGCTTATTACTTGGTT
TAGCAATATGGTCAATGCATTTTCTCGGGATGCTGGCATGCCATTTACCTGGTGATTATCATTTTGATCCAGGACTAACA
CTGTTTTCTTACATCATTGCATTTATTACATCGACCTTTGCTGTATGGTTGACAACACGCGAAAGCCTTCCTATCGCCCG
TTTGATATTGGGTTCTGTATTGATGGGACTCGGTATTGCGGGTATGCACTATACCGGAATGATGGGTTTGATCCTGCATC
AGTATGAGCTGCATTATGAACCCCTTATGGTCATCTTTTCTGTTTTAATTGGCGTGAGTGGTTCTGGCCTGGCTTTTTCA
CTTATTTTTAAATATAAAAATGCGACGAAAAATAGAATTCTGATCCAGATTGCTGCTGCTATTGCCATGGCATTGGCGAT
TGTTGGTTTACATTACACTGGGATGTCTGCTACTTTTTTTAGTCAGCAAGGCGTCACCAGTTCTTTGTCACTTTATCAGG
CAGGACATGGTTTATTTCTGTTTACCATGATCTTTATTACGAGTTTGGTTTTGGTTGCTGGATACTGTATTGCTGTACTT
GAGTTTCGGCTGGAAGAGCGCAATAAAGCACTTTTGAAATTAAATAGAGAATTGGCCAATCTCGCTGTACTTGATAATCT
GACCAAGTTGCCTAATCGTTTGTTTTTAATGGATTATGTCAAAGATCGGTTTTCCAAAACACATCAAAAAGATGAAAAGA
TTGCGTTCTTATACCTAGATTTGGACCGGTTTAAATCGGTGAATGATGCATTTGGACATCATGTAGGTGATCAGTTGTTG
ATACAGGTTGCCAACCGGATTCAGAAGCATCTGGATGATCATTGTAAATTACTTAGAATTGGTGGTGATGAATTCTTAAT
TATTATTGAGAAAAGAAGAACAAGACAAATTGCTCAAATTGCAGAAGACGTATTAAGGCAAGTTCAGGAAGCGTATTTGA
TTACCAGTAAGGAAATTAATATTTCGGCCAGTATCGGGATTGCGATTTATCCTGAACACGGAAATAACATGCAGGACTTA
CTTATTAATGCCGATATTGCAATGGTGATGGCTAAAGATCAGGGGCGTAATACCTATAGCATTTTTAATTATACAAGCGA
GCATAATGAAACACGAAGTCAGTCCAAATTGATTAACGATTTGTATAAGGCTGTAGAAGAACAACAATTTGTACTTTTTT
ATCAGGCTAAATATGCTGCTAATTTAAACATATGTGGCGTTGAAGCATTAATTCGTTGGCAACATCCTACTTTTGGTTTG
TTAAGCCCACATATGTTCATTGATGGTGCAGAAAAGACAGGTTTGATTATTCCCATGGGATATTGGGCGCTTGAACAAGC
ATGTAAGCAGATCCAAATATGGGAAGCAACGCAAACAGTTCTTTATCCCATCGCGGTTAATCTGTCTGCGATTCAATTTG
AAAATAAGCATCTGGTGGGTACACTCGAAAAGTTGATACGAAAATATCAGATACGCCCAAATCATCTGATTATTGAAATT
ACCGAATCGACCGCAATGCGGCATATTGATTCTAGTATTGCAACATTTGAGCAAATGCGTGCTTTAGGCATTCAGATTGC
GATTGACGATTTTGGAACAGGGCATTCAAGTTTTCTTTATTTAAAAGATCTTCCTGTAGATGAGCTGAAGATTGACCGTG
GTTTTATTATTCACTTGCATGAAGGCTCCAAAGAAGAAGTCATTTTAGAGAGTATTATTCATCTTGCGACCAAACTTGGT
CTTAAGGTTACTGCGGAAGGGGTAGAAACCCAGTTACAGGCAGACATTCTGATTCGTTTGGGTTGCCAACAGCTTCAGGG
CTATTTATTGGGACGACCAGTTCCTGTTGAACAACTGGTGCAGTAA

Upstream 100 bases:

>100_bases
AATCTTGATCGTGTTGGTTGGATTTATCATAAAAATATCCTCAACTTATATCTGACACCATAAAAACAAGTTATTTCATA
AATACGCATGGAAGTCCTTT

Downstream 100 bases:

>100_bases
GTTGAATAATTAAACTTAAACACATGAATATATTTATAAAGTTAGATTTACCATCAATTGGTCATATAACCATATCTTGT
TTAGACATGTTTAAACAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MEHMDYDISLVIGSIVLAVIICFFAISLEQLIFKQRYERYQTLILIVSGLLLGLAIWSMHFLGMLACHLPGDYHFDPGLT
LFSYIIAFITSTFAVWLTTRESLPIARLILGSVLMGLGIAGMHYTGMMGLILHQYELHYEPLMVIFSVLIGVSGSGLAFS
LIFKYKNATKNRILIQIAAAIAMALAIVGLHYTGMSATFFSQQGVTSSLSLYQAGHGLFLFTMIFITSLVLVAGYCIAVL
EFRLEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGHHVGDQLL
IQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQIAEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDL
LINADIAMVMAKDQGRNTYSIFNYTSEHNETRSQSKLINDLYKAVEEQQFVLFYQAKYAANLNICGVEALIRWQHPTFGL
LSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRKYQIRPNHLIIEI
TESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLG
LKVTAEGVETQLQADILIRLGCQQLQGYLLGRPVPVEQLVQ

Sequences:

>Translated_681_residues
MEHMDYDISLVIGSIVLAVIICFFAISLEQLIFKQRYERYQTLILIVSGLLLGLAIWSMHFLGMLACHLPGDYHFDPGLT
LFSYIIAFITSTFAVWLTTRESLPIARLILGSVLMGLGIAGMHYTGMMGLILHQYELHYEPLMVIFSVLIGVSGSGLAFS
LIFKYKNATKNRILIQIAAAIAMALAIVGLHYTGMSATFFSQQGVTSSLSLYQAGHGLFLFTMIFITSLVLVAGYCIAVL
EFRLEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGHHVGDQLL
IQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQIAEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDL
LINADIAMVMAKDQGRNTYSIFNYTSEHNETRSQSKLINDLYKAVEEQQFVLFYQAKYAANLNICGVEALIRWQHPTFGL
LSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRKYQIRPNHLIIEI
TESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLG
LKVTAEGVETQLQADILIRLGCQQLQGYLLGRPVPVEQLVQ
>Mature_681_residues
MEHMDYDISLVIGSIVLAVIICFFAISLEQLIFKQRYERYQTLILIVSGLLLGLAIWSMHFLGMLACHLPGDYHFDPGLT
LFSYIIAFITSTFAVWLTTRESLPIARLILGSVLMGLGIAGMHYTGMMGLILHQYELHYEPLMVIFSVLIGVSGSGLAFS
LIFKYKNATKNRILIQIAAAIAMALAIVGLHYTGMSATFFSQQGVTSSLSLYQAGHGLFLFTMIFITSLVLVAGYCIAVL
EFRLEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLDLDRFKSVNDAFGHHVGDQLL
IQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQIAEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDL
LINADIAMVMAKDQGRNTYSIFNYTSEHNETRSQSKLINDLYKAVEEQQFVLFYQAKYAANLNICGVEALIRWQHPTFGL
LSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVGTLEKLIRKYQIRPNHLIIEI
TESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLYLKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLG
LKVTAEGVETQLQADILIRLGCQQLQGYLLGRPVPVEQLVQ

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=469, Percent_Identity=33.2622601279318, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=31.9347319347319, Blast_Score=215, Evalue=9e-57,
Organism=Escherichia coli, GI226510982, Length=439, Percent_Identity=27.5626423690205, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI1788502, Length=243, Percent_Identity=31.2757201646091, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=34.297520661157, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1786507, Length=245, Percent_Identity=34.6938775510204, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87082096, Length=464, Percent_Identity=26.2931034482759, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI87081980, Length=233, Percent_Identity=34.7639484978541, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=32.6446280991736, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1788849, Length=249, Percent_Identity=32.5301204819277, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1787055, Length=377, Percent_Identity=26.525198938992, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=33.0578512396694, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788381, Length=443, Percent_Identity=23.9277652370203, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI145693134, Length=256, Percent_Identity=28.125, Blast_Score=86, Evalue=8e-18,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=33.5443037974684, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=32.5842696629214, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=28.9617486338798, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=27.0588235294118, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=32.1428571428571, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=30, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787056, Length=165, Percent_Identity=32.1212121212121, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788956, Length=178, Percent_Identity=29.7752808988764, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI87081974, Length=134, Percent_Identity=29.1044776119403, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=31.4465408805031, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=27.1604938271605, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 76898; Mature: 76898

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHMDYDISLVIGSIVLAVIICFFAISLEQLIFKQRYERYQTLILIVSGLLLGLAIWSMH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGMLACHLPGDYHFDPGLTLFSYIIAFITSTFAVWLTTRESLPIARLILGSVLMGLGIA
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHCCC
GMHYTGMMGLILHQYELHYEPLMVIFSVLIGVSGSGLAFSLIFKYKNATKNRILIQIAAA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
IAMALAIVGLHYTGMSATFFSQQGVTSSLSLYQAGHGLFLFTMIFITSLVLVAGYCIAVL
HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EFRLEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE
LDRFKSVNDAFGHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECHHHHHHHHH
AEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYS
HHHHHHHHHHHHEEECCCEEEEEEEEEEEECCCCCCHHHHEEECCEEEEEEECCCCCEEE
IFNYTSEHNETRSQSKLINDLYKAVEEQQFVLFYQAKYAANLNICGVEALIRWQHPTFGL
EEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEHHCCCCEEEHHHHHEECCCCCCC
LSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVG
CCCCEEEECCCCCCEEEECCHHHHHHHHHHCCHHHHHHHEEEEEEEEEEEEEECCCHHHH
TLEKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLY
HHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCEEE
LKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRL
EECCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHH
GCQQLQGYLLGRPVPVEQLVQ
CHHHHHHHHCCCCCCHHHHCC
>Mature Secondary Structure
MEHMDYDISLVIGSIVLAVIICFFAISLEQLIFKQRYERYQTLILIVSGLLLGLAIWSMH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGMLACHLPGDYHFDPGLTLFSYIIAFITSTFAVWLTTRESLPIARLILGSVLMGLGIA
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHCCC
GMHYTGMMGLILHQYELHYEPLMVIFSVLIGVSGSGLAFSLIFKYKNATKNRILIQIAAA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
IAMALAIVGLHYTGMSATFFSQQGVTSSLSLYQAGHGLFLFTMIFITSLVLVAGYCIAVL
HHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EFRLEERNKALLKLNRELANLAVLDNLTKLPNRLFLMDYVKDRFSKTHQKDEKIAFLYLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEE
LDRFKSVNDAFGHHVGDQLLIQVANRIQKHLDDHCKLLRIGGDEFLIIIEKRRTRQIAQI
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECHHHHHHHHH
AEDVLRQVQEAYLITSKEINISASIGIAIYPEHGNNMQDLLINADIAMVMAKDQGRNTYS
HHHHHHHHHHHHEEECCCEEEEEEEEEEEECCCCCCHHHHEEECCEEEEEEECCCCCEEE
IFNYTSEHNETRSQSKLINDLYKAVEEQQFVLFYQAKYAANLNICGVEALIRWQHPTFGL
EEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEHHCCCCEEEHHHHHEECCCCCCC
LSPHMFIDGAEKTGLIIPMGYWALEQACKQIQIWEATQTVLYPIAVNLSAIQFENKHLVG
CCCCEEEECCCCCCEEEECCHHHHHHHHHHCCHHHHHHHEEEEEEEEEEEEEECCCHHHH
TLEKLIRKYQIRPNHLIIEITESTAMRHIDSSIATFEQMRALGIQIAIDDFGTGHSSFLY
HHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCEEE
LKDLPVDELKIDRGFIIHLHEGSKEEVILESIIHLATKLGLKVTAEGVETQLQADILIRL
EECCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHH
GCQQLQGYLLGRPVPVEQLVQ
CHHHHHHHHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]