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The map label for this gene is ymdC [H]

Identifier: 50086021

GI number: 50086021

Start: 2930785

End: 2932344

Strand: Direct

Name: ymdC [H]

Synonym: ACIAD3001

Alternate gene names: 50086021

Gene position: 2930785-2932344 (Clockwise)

Preceding gene: 50086019

Following gene: 50086023

Centisome position: 81.44

GC content: 42.05

Gene sequence:

>1560_bases
ATGCTGACATTGAGTCTAGTCACCGTGGTGGGAATCAATGGATGCAGTACCCTTCCAAAACATGGTCCAGAAGTAACTCA
ATATGCGTATGATATTGATACATCACAGACCTCACTCGCACAAATCATTACGCCATTAAAACAACAAAATCTAGGCTTAA
CTGGATACCATATGCTGTATGAACCCCTTGAAGCGCTGGCTGCTCGCCTCAGATTAATCGATAAGGCAGAAAAAACCCTC
GATCTACAATATTACATCTGGGATAACGATAAAATTGGCGCGTTAGCATTACATGCCCTGATCCGTGCCGCAGATCGTGG
GGTAAAAGTCCGTCTCTTGATCGATGACAACAACGCCAAACAGATCGAAGGTGTCTTACTCGCCTTGTCCCAGCATCAGA
ATATTGAAGTCAAACTGTTTAATCCTTATCGCTTCCGTAAATACCGTGCAATGGACATGATTCTGGATTTAAAACGTATC
AATCGGCGTATGCATAACAAAAGCTTTATTGCAGACAATCAGGTTGCGCTCATTGGCGGGCGCAACATGACCAATCAGTA
CTACAATGTTAGTGATAATTATCAGTTTTCAGACGTTGATGTTTTACTGGTTGGGGCTGCTGTCGATGATATCGTCAAAT
CATTTGATGACTACTGGAACGATGAATATGCCTATTCGGTTCAAAACATCGTCAACCCCGAACAGCATCGCTTACGTTAT
CAAAGTCTAAAGCAACAGCTTGATGATTATTATCAGGAAGTGACCGTACAAAATTATCTGGATCTGACCACACGCTCACA
TGCTTTTGATCAATGGCTCAATAACAATATCCAGCTTGATTGGGTCAAAGCGACAGTGGTCAAAGACGCTCCCGATAAAA
TTCGTGCCAAAGCCAACAAAGAACAACATCTCAATTTTCAGCTCATCAAACATCTTGAAAAGCCAGAAGATAACGTCGAT
CTCATCTCTGCCTATTTTGTTCCAGAAAAACAGGGGGCCAAACATTTGAGTGATATGGCACAGGATGGCATTAAAGTACG
TGTTCTGACCAACTCCTTTAAAGCCAACGATGTCCCTGTGGTCCATGCGTTTTATGCCAAATATCGTCAGGAACTTCTGG
AAAATGGCGTGCAACTTTATGAGTTTTTACCCACACTTGAAAAAGAAGAACTGGACAAATATACCGATGAACTGGTTAAA
AAAGCCAAGGTCAGTATTAAAGGGCTTAGCCGCTCTAGTTTACATGCCAAGATGATGGCATTAGATCAGAAACAAGTGTT
TATTGGATCCTTTAACTTTGACCCACGTTCGGCCTATCTCAATACCGAAATAGGCGTCATCCTGAATAGTCCACCATTAG
CGATGGCCGTACATCAGACGATGGATCAACAACTGACCCACTATGCTTATAAATTGGTACTAGATGCCAATCACAAAATT
AATTGGTATCGGCAGACATCCACTGGTACCAAAATCTATACCAAAGAACCCCGCATGAAATGGTGGCAAAAAGCTGGAAT
TAAGTTGATTTCATGGCTGCCTATTGAAGGTTTCATGTAA

Upstream 100 bases:

>100_bases
CTAGCCCCTCTTATTGTCTGAGTACATTATGGCGAAAACATCCACTATCTTCTCACAACATCGCAAATCTATGACAAAAC
AACACGCAATAAGACATTGT

Downstream 100 bases:

>100_bases
TATTTTTCGATTTTACTGTCAGTTGATGTAGTTTAAGTAATCCTTGTTGCATTTTTTCCTGTACTTCAGCCGTCAGTGTT
TGAGTGGTGTGCCCTTCAAC

Product: phospholipase D protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MLTLSLVTVVGINGCSTLPKHGPEVTQYAYDIDTSQTSLAQIITPLKQQNLGLTGYHMLYEPLEALAARLRLIDKAEKTL
DLQYYIWDNDKIGALALHALIRAADRGVKVRLLIDDNNAKQIEGVLLALSQHQNIEVKLFNPYRFRKYRAMDMILDLKRI
NRRMHNKSFIADNQVALIGGRNMTNQYYNVSDNYQFSDVDVLLVGAAVDDIVKSFDDYWNDEYAYSVQNIVNPEQHRLRY
QSLKQQLDDYYQEVTVQNYLDLTTRSHAFDQWLNNNIQLDWVKATVVKDAPDKIRAKANKEQHLNFQLIKHLEKPEDNVD
LISAYFVPEKQGAKHLSDMAQDGIKVRVLTNSFKANDVPVVHAFYAKYRQELLENGVQLYEFLPTLEKEELDKYTDELVK
KAKVSIKGLSRSSLHAKMMALDQKQVFIGSFNFDPRSAYLNTEIGVILNSPPLAMAVHQTMDQQLTHYAYKLVLDANHKI
NWYRQTSTGTKIYTKEPRMKWWQKAGIKLISWLPIEGFM

Sequences:

>Translated_519_residues
MLTLSLVTVVGINGCSTLPKHGPEVTQYAYDIDTSQTSLAQIITPLKQQNLGLTGYHMLYEPLEALAARLRLIDKAEKTL
DLQYYIWDNDKIGALALHALIRAADRGVKVRLLIDDNNAKQIEGVLLALSQHQNIEVKLFNPYRFRKYRAMDMILDLKRI
NRRMHNKSFIADNQVALIGGRNMTNQYYNVSDNYQFSDVDVLLVGAAVDDIVKSFDDYWNDEYAYSVQNIVNPEQHRLRY
QSLKQQLDDYYQEVTVQNYLDLTTRSHAFDQWLNNNIQLDWVKATVVKDAPDKIRAKANKEQHLNFQLIKHLEKPEDNVD
LISAYFVPEKQGAKHLSDMAQDGIKVRVLTNSFKANDVPVVHAFYAKYRQELLENGVQLYEFLPTLEKEELDKYTDELVK
KAKVSIKGLSRSSLHAKMMALDQKQVFIGSFNFDPRSAYLNTEIGVILNSPPLAMAVHQTMDQQLTHYAYKLVLDANHKI
NWYRQTSTGTKIYTKEPRMKWWQKAGIKLISWLPIEGFM
>Mature_519_residues
MLTLSLVTVVGINGCSTLPKHGPEVTQYAYDIDTSQTSLAQIITPLKQQNLGLTGYHMLYEPLEALAARLRLIDKAEKTL
DLQYYIWDNDKIGALALHALIRAADRGVKVRLLIDDNNAKQIEGVLLALSQHQNIEVKLFNPYRFRKYRAMDMILDLKRI
NRRMHNKSFIADNQVALIGGRNMTNQYYNVSDNYQFSDVDVLLVGAAVDDIVKSFDDYWNDEYAYSVQNIVNPEQHRLRY
QSLKQQLDDYYQEVTVQNYLDLTTRSHAFDQWLNNNIQLDWVKATVVKDAPDKIRAKANKEQHLNFQLIKHLEKPEDNVD
LISAYFVPEKQGAKHLSDMAQDGIKVRVLTNSFKANDVPVVHAFYAKYRQELLENGVQLYEFLPTLEKEELDKYTDELVK
KAKVSIKGLSRSSLHAKMMALDQKQVFIGSFNFDPRSAYLNTEIGVILNSPPLAMAVHQTMDQQLTHYAYKLVLDANHKI
NWYRQTSTGTKIYTKEPRMKWWQKAGIKLISWLPIEGFM

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=479, Percent_Identity=39.874739039666, Blast_Score=344, Evalue=7e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59914; Mature: 59914

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLSLVTVVGINGCSTLPKHGPEVTQYAYDIDTSQTSLAQIITPLKQQNLGLTGYHMLY
CEEEEEEEEEECCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHH
EPLEALAARLRLIDKAEKTLDLQYYIWDNDKIGALALHALIRAADRGVKVRLLIDDNNAK
HHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCH
QIEGVLLALSQHQNIEVKLFNPYRFRKYRAMDMILDLKRINRRMHNKSFIADNQVALIGG
HHHHHHEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEC
RNMTNQYYNVSDNYQFSDVDVLLVGAAVDDIVKSFDDYWNDEYAYSVQNIVNPEQHRLRY
CCCCCCEECCCCCCEECCEEEEEEHHHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHH
QSLKQQLDDYYQEVTVQNYLDLTTRSHAFDQWLNNNIQLDWVKATVVKDAPDKIRAKANK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHCCH
EQHLNFQLIKHLEKPEDNVDLISAYFVPEKQGAKHLSDMAQDGIKVRVLTNSFKANDVPV
HHCCCHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCH
VHAFYAKYRQELLENGVQLYEFLPTLEKEELDKYTDELVKKAKVSIKGLSRSSLHAKMMA
HHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LDQKQVFIGSFNFDPRSAYLNTEIGVILNSPPLAMAVHQTMDQQLTHYAYKLVLDANHKI
CCCCEEEEEECCCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCCE
NWYRQTSTGTKIYTKEPRMKWWQKAGIKLISWLPIEGFM
EEEEECCCCCEEEECCCHHHHHHHCCCEEEEEECCCCCC
>Mature Secondary Structure
MLTLSLVTVVGINGCSTLPKHGPEVTQYAYDIDTSQTSLAQIITPLKQQNLGLTGYHMLY
CEEEEEEEEEECCCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHH
EPLEALAARLRLIDKAEKTLDLQYYIWDNDKIGALALHALIRAADRGVKVRLLIDDNNAK
HHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCH
QIEGVLLALSQHQNIEVKLFNPYRFRKYRAMDMILDLKRINRRMHNKSFIADNQVALIGG
HHHHHHEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEC
RNMTNQYYNVSDNYQFSDVDVLLVGAAVDDIVKSFDDYWNDEYAYSVQNIVNPEQHRLRY
CCCCCCEECCCCCCEECCEEEEEEHHHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHH
QSLKQQLDDYYQEVTVQNYLDLTTRSHAFDQWLNNNIQLDWVKATVVKDAPDKIRAKANK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHCCH
EQHLNFQLIKHLEKPEDNVDLISAYFVPEKQGAKHLSDMAQDGIKVRVLTNSFKANDVPV
HHCCCHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCH
VHAFYAKYRQELLENGVQLYEFLPTLEKEELDKYTDELVKKAKVSIKGLSRSSLHAKMMA
HHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LDQKQVFIGSFNFDPRSAYLNTEIGVILNSPPLAMAVHQTMDQQLTHYAYKLVLDANHKI
CCCCEEEEEECCCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCCE
NWYRQTSTGTKIYTKEPRMKWWQKAGIKLISWLPIEGFM
EEEEECCCCCEEEECCCHHHHHHHCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]