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The map label for this gene is ydfH [C]

Identifier: 50085815

GI number: 50085815

Start: 2698248

End: 2698994

Strand: Reverse

Name: ydfH [C]

Synonym: ACIAD2759

Alternate gene names: 50085815

Gene position: 2698994-2698248 (Counterclockwise)

Preceding gene: 50085817

Following gene: 50085814

Centisome position: 75.0

GC content: 45.52

Gene sequence:

>747_bases
GTGGTTGCAATTTTCGATATCTGTGCGTATTTTAACAACAGCATCCTCGTAATTGTTGACATCATCATGACCGAACTTCT
TGAGCCAGCCGCGCGCGCAAGTACACAAGAAACCCTGACCGATCAGATTTTTAAAAAAATTCAATCGGCGATTGTCAGTG
GTGAAATCGCAGCGGGCAGTAAAATTTCGGAGCCAGAATTGGCACGTGTTTATGGCATCAGCCGTGGGCCGTTGCGAGAA
GCCATTCATCGGCTAGAAGGACAAAAACTGGTCGAGCGCACCGCACATGTGGGCGCGCGGGTGGTATCGCTATCACATCA
GCAATTGCGAGAGCTGTATCAAATTCGTGAAAACCTAGAAGGTCTGGCTTGCCGACTAGCTGCGCAAAGCATCGACAAAC
AGCAAATCTTAAATTTGCGTGACGTATTGCATCTGCACGCGCAAGATCCCGATTTTAAAGAAGGTAAGGGCTACTATTTA
CAAGAGGGCCAAGACGATTTTCATTACTGCATTATTAAAAATTGTGGCAACAAAACCTTGGAAAAAATGCTCTGCGATGA
ACTGTATCATTTAATTCGAATGTATCGGGTGCAGTATTCCAAAACCCCGAATCGTCCGCACAGGGCACTGTCTGAACATC
TACATATTTTAAACGCGATTGCCGAAGGAGATACTGAACTGGCAGAACTTCTGATGCGCAGGCATATCGCAGCATCGTAT
CGCAACATCGAACAACATTTTATTTAA

Upstream 100 bases:

>100_bases
AAATTTTATACTTGTTTTTATATAATTTTTATATATTTCAATGTTGTAAAAAATAAAGGCCATTTTTTTTGAACTAACTG
GTTTTTATATTGTCGACAAT

Downstream 100 bases:

>100_bases
TTGACAGGGAGAGAAACCAGCACATGTCTACAGTATCAGCAGGACAGAAATTTAGAGACGCGGTCGCCAGTGAACGCCCA
TTACAGGTGGTGGGTGCCAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MVAIFDICAYFNNSILVIVDIIMTELLEPAARASTQETLTDQIFKKIQSAIVSGEIAAGSKISEPELARVYGISRGPLRE
AIHRLEGQKLVERTAHVGARVVSLSHQQLRELYQIRENLEGLACRLAAQSIDKQQILNLRDVLHLHAQDPDFKEGKGYYL
QEGQDDFHYCIIKNCGNKTLEKMLCDELYHLIRMYRVQYSKTPNRPHRALSEHLHILNAIAEGDTELAELLMRRHIAASY
RNIEQHFI

Sequences:

>Translated_248_residues
MVAIFDICAYFNNSILVIVDIIMTELLEPAARASTQETLTDQIFKKIQSAIVSGEIAAGSKISEPELARVYGISRGPLRE
AIHRLEGQKLVERTAHVGARVVSLSHQQLRELYQIRENLEGLACRLAAQSIDKQQILNLRDVLHLHAQDPDFKEGKGYYL
QEGQDDFHYCIIKNCGNKTLEKMLCDELYHLIRMYRVQYSKTPNRPHRALSEHLHILNAIAEGDTELAELLMRRHIAASY
RNIEQHFI
>Mature_248_residues
MVAIFDICAYFNNSILVIVDIIMTELLEPAARASTQETLTDQIFKKIQSAIVSGEIAAGSKISEPELARVYGISRGPLRE
AIHRLEGQKLVERTAHVGARVVSLSHQQLRELYQIRENLEGLACRLAAQSIDKQQILNLRDVLHLHAQDPDFKEGKGYYL
QEGQDDFHYCIIKNCGNKTLEKMLCDELYHLIRMYRVQYSKTPNRPHRALSEHLHILNAIAEGDTELAELLMRRHIAASY
RNIEQHFI

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=219, Percent_Identity=28.310502283105, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082149, Length=214, Percent_Identity=27.5700934579439, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28358; Mature: 28358

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAIFDICAYFNNSILVIVDIIMTELLEPAARASTQETLTDQIFKKIQSAIVSGEIAAGS
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KISEPELARVYGISRGPLREAIHRLEGQKLVERTAHVGARVVSLSHQQLRELYQIRENLE
CCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLACRLAAQSIDKQQILNLRDVLHLHAQDPDFKEGKGYYLQEGQDDFHYCIIKNCGNKTL
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEHHCCHHHH
EKMLCDELYHLIRMYRVQYSKTPNRPHRALSEHLHILNAIAEGDTELAELLMRRHIAASY
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RNIEQHFI
HHHHHHCC
>Mature Secondary Structure
MVAIFDICAYFNNSILVIVDIIMTELLEPAARASTQETLTDQIFKKIQSAIVSGEIAAGS
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KISEPELARVYGISRGPLREAIHRLEGQKLVERTAHVGARVVSLSHQQLRELYQIRENLE
CCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLACRLAAQSIDKQQILNLRDVLHLHAQDPDFKEGKGYYLQEGQDDFHYCIIKNCGNKTL
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHEEEEHHCCHHHH
EKMLCDELYHLIRMYRVQYSKTPNRPHRALSEHLHILNAIAEGDTELAELLMRRHIAASY
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RNIEQHFI
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]