| Definition | Acinetobacter sp. ADP1 chromosome, complete genome. |
|---|---|
| Accession | NC_005966 |
| Length | 3,598,621 |
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The map label for this gene is comA [H]
Identifier: 50085709
GI number: 50085709
Start: 2592109
End: 2594487
Strand: Reverse
Name: comA [H]
Synonym: ACIAD2639
Alternate gene names: 50085709
Gene position: 2594487-2592109 (Counterclockwise)
Preceding gene: 50085710
Following gene: 50085707
Centisome position: 72.1
GC content: 37.83
Gene sequence:
>2379_bases ATGATGGGCAGGACACTGGAATGCATTGAACCATTTACATGCATTACAGGAATTCTGACTTTTTTGATATGGGCTATTTA TTTCTACAAAAAACGAAAGCATCAGATTGGTTCTGGATTAAGAGCACTTGTTATCTTAATTTCTGCCAGTTTCTTATTTG GTATAGGCGCACAATACGCAGATTCTGCTCTTGAGGAACGCTTGTATTATAAAATAATGCATTCGGATACACATGAGGTG ATTATTTACGTTCATCAAATGGGTGAATCTTCAGATAAAGGTATAAAACAAGTCGCTGAAGTACTCAACATTCATCCTGA TGTCGTGAATTGGGTATTTTATATTGATCAGAGCTTACTGGGGGCTGAAAAAAGCAGTAGCCTTGAGCTTGGTCAGTATT ATCGAATCACTGCTAAGACCAAGCCGATACATAGCTATGCACTTGAAGGTGCATTTGATGTGGAAAAATGGTTTGTTCAG CAAAATTGGCAAGCGACTGCCCAAGTTTATCGTATACAAACCTTAAGCAAACAAGAGGTGATGAGTGCAGGTTTTTATTT ACATGTAAAACAGCAACAGACATGGCGAGCACAGTTTTTACAGTCTGTTGAAAAGCTCAGGCTTAAATTTCGGAACTACT TTATAGATTCATCCTTATCACATCATGCACTCTTACTGGCGCTCCTAACAGGAGACCGCAGTTTACTCAATCCAGAGCTT GAGCAGCAATTTCAACGTTTTGGCATTTCTCACTTGTTGGCGATTTCGGGACCCCATGTGCTCATTTTTGCTGCCATGGT AAGCTGGATTTTTACTCGATTGATTCATCGGTTTAAACCAGAAATTTACTTATCAATTCCACGTCAAAAATTGGTATTAC TCCCTTTTTTAATGTGTGTGATTTTATATTGTGCTTTTGTTGGCTTTGAAATCCCTGCACTTAGAACGCTGTTTACTGTA ATGCTTGGCAGTATTTTACTTTTGATACGACATCATCTAAGTGCTTTTTCACTTTTGGTCTTGAGTGCATCCTTACTGTT ATGGATGGACCCCTTTAGTATTTTATCCGCTGCATTTTGGCTATCTTATGGTGCATGTTTTATTTTGATCAGAATTTATC AAGATATGACACAAGCACAGCAGTTTCATCAGACTCGTTTTACGCGTGGGATGCAGATTCTAAAAGCATTGGTTAGATCA CAATGGAAAATTTTTGTCGCTCTGATGCCTTTGACGTTAATTATTTTTAAGCAAATATCATGGATTGCTCCATTATCTAA TCTAATCGCAATTCCGATATTGGGCGGTATTATTGTGCCTCTAGATATTATGGCTGGATGCTTATGGCTATTCATTCCAT CACTTGGAAATCTGTTGTTTTATTTAAATAATAGCCTGCTCGAATTATTTATCGGAATCTTAAAAGGTCTTGATCATTTA TTTAATCCTCAGCTTCAATATTATGCATTTACGCCGTTACTACTGATTTGTCTCACTTTAGCCATTGTGATCCTATTTCT ACCCAAAGGCGTGGTTCCAAAATTCTGGTCAGTTTTATGCTTCGTTCCACTTTTAATTCCTTCTAAAATGATTCGGCCCA CTCAGATTAGTATTTTAGATGTAGGACAAGGCCAGTCAATTTTTATTCAGGACCAAACCCAGCGTATTTTGCTAGATACG GGTGGATACTATGATGAAAGTAAATTTAGTATTGGCAAACAGGTCGTGGTTCCATTCTTGAAGTCTCAAGGTGTGCATCA ACTGGATCGAGTAATTTTGACTCATCTTGATCAGGATCATAGTGGTGGACTACCTGCAGTATTGCAATTGATCCCAACGC GTATGATTCAGGCCAATGAAGAAATTAAAGATTTATCTATTCCATTCTCATTGTGTCATTCTGGTCAGACTTGGGAAACA TCAGAGCTAAAAATCCAGATATTGTCACCAAAATTAGAAAATTTACAGTCTACGGTATTTAATCGTAATGAAGCGTCTTG TGTGATGTATTTACAGCTTAAACAAGCATCAGATTTAAAGTATTTTCTGATGATGGGGGATGCAGGCTGGGAAACCGAAT ATCAGCTATTACAACAATATCCCGATCTTAAAGTTGATGTTTTAATTTTGGGGCATCATGGCAGCCAACACAGTTCATCT TATGATTTTCTCAAGAGATATCATCCCAAAATTGCGATTGCTTCAGCAGGGTTTGAAAATGGATATGGTCATCCGAGTGC TGAGGTAAGCAATCGTCTGCAAGATTTGAATATTCCCTTATTGAGTACAACTGATAAGGGAGCGATTCATTTTAAGTTTG ATTCAGGGAATGAGCAGACAGAATTTTATCGTCAGTCGTATAAGTGGTTGCAGCGTTAA
Upstream 100 bases:
>100_bases TCCGAGAGCTTTATCCTCTATTTAATATTATATAAAGCAATTACTTTAGTTTATAACAATGTTTAAAATTATTTTATTGG GGTGGATTGCTGGCATTGCC
Downstream 100 bases:
>100_bases GACGCTCTCTGTTGGCTTGACGTACCTGTTCTACATTGGCTAAAGCATCTTCTTCATTGAGCGTGTATAGATTATCTAGT TCAGGATTGGCTTTGAAACG
Product: competence factor involved in DNA uptake
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 792; Mature: 792
Protein sequence:
>792_residues MMGRTLECIEPFTCITGILTFLIWAIYFYKKRKHQIGSGLRALVILISASFLFGIGAQYADSALEERLYYKIMHSDTHEV IIYVHQMGESSDKGIKQVAEVLNIHPDVVNWVFYIDQSLLGAEKSSSLELGQYYRITAKTKPIHSYALEGAFDVEKWFVQ QNWQATAQVYRIQTLSKQEVMSAGFYLHVKQQQTWRAQFLQSVEKLRLKFRNYFIDSSLSHHALLLALLTGDRSLLNPEL EQQFQRFGISHLLAISGPHVLIFAAMVSWIFTRLIHRFKPEIYLSIPRQKLVLLPFLMCVILYCAFVGFEIPALRTLFTV MLGSILLLIRHHLSAFSLLVLSASLLLWMDPFSILSAAFWLSYGACFILIRIYQDMTQAQQFHQTRFTRGMQILKALVRS QWKIFVALMPLTLIIFKQISWIAPLSNLIAIPILGGIIVPLDIMAGCLWLFIPSLGNLLFYLNNSLLELFIGILKGLDHL FNPQLQYYAFTPLLLICLTLAIVILFLPKGVVPKFWSVLCFVPLLIPSKMIRPTQISILDVGQGQSIFIQDQTQRILLDT GGYYDESKFSIGKQVVVPFLKSQGVHQLDRVILTHLDQDHSGGLPAVLQLIPTRMIQANEEIKDLSIPFSLCHSGQTWET SELKIQILSPKLENLQSTVFNRNEASCVMYLQLKQASDLKYFLMMGDAGWETEYQLLQQYPDLKVDVLILGHHGSQHSSS YDFLKRYHPKIAIASAGFENGYGHPSAEVSNRLQDLNIPLLSTTDKGAIHFKFDSGNEQTEFYRQSYKWLQR
Sequences:
>Translated_792_residues MMGRTLECIEPFTCITGILTFLIWAIYFYKKRKHQIGSGLRALVILISASFLFGIGAQYADSALEERLYYKIMHSDTHEV IIYVHQMGESSDKGIKQVAEVLNIHPDVVNWVFYIDQSLLGAEKSSSLELGQYYRITAKTKPIHSYALEGAFDVEKWFVQ QNWQATAQVYRIQTLSKQEVMSAGFYLHVKQQQTWRAQFLQSVEKLRLKFRNYFIDSSLSHHALLLALLTGDRSLLNPEL EQQFQRFGISHLLAISGPHVLIFAAMVSWIFTRLIHRFKPEIYLSIPRQKLVLLPFLMCVILYCAFVGFEIPALRTLFTV MLGSILLLIRHHLSAFSLLVLSASLLLWMDPFSILSAAFWLSYGACFILIRIYQDMTQAQQFHQTRFTRGMQILKALVRS QWKIFVALMPLTLIIFKQISWIAPLSNLIAIPILGGIIVPLDIMAGCLWLFIPSLGNLLFYLNNSLLELFIGILKGLDHL FNPQLQYYAFTPLLLICLTLAIVILFLPKGVVPKFWSVLCFVPLLIPSKMIRPTQISILDVGQGQSIFIQDQTQRILLDT GGYYDESKFSIGKQVVVPFLKSQGVHQLDRVILTHLDQDHSGGLPAVLQLIPTRMIQANEEIKDLSIPFSLCHSGQTWET SELKIQILSPKLENLQSTVFNRNEASCVMYLQLKQASDLKYFLMMGDAGWETEYQLLQQYPDLKVDVLILGHHGSQHSSS YDFLKRYHPKIAIASAGFENGYGHPSAEVSNRLQDLNIPLLSTTDKGAIHFKFDSGNEQTEFYRQSYKWLQR >Mature_792_residues MMGRTLECIEPFTCITGILTFLIWAIYFYKKRKHQIGSGLRALVILISASFLFGIGAQYADSALEERLYYKIMHSDTHEV IIYVHQMGESSDKGIKQVAEVLNIHPDVVNWVFYIDQSLLGAEKSSSLELGQYYRITAKTKPIHSYALEGAFDVEKWFVQ QNWQATAQVYRIQTLSKQEVMSAGFYLHVKQQQTWRAQFLQSVEKLRLKFRNYFIDSSLSHHALLLALLTGDRSLLNPEL EQQFQRFGISHLLAISGPHVLIFAAMVSWIFTRLIHRFKPEIYLSIPRQKLVLLPFLMCVILYCAFVGFEIPALRTLFTV MLGSILLLIRHHLSAFSLLVLSASLLLWMDPFSILSAAFWLSYGACFILIRIYQDMTQAQQFHQTRFTRGMQILKALVRS QWKIFVALMPLTLIIFKQISWIAPLSNLIAIPILGGIIVPLDIMAGCLWLFIPSLGNLLFYLNNSLLELFIGILKGLDHL FNPQLQYYAFTPLLLICLTLAIVILFLPKGVVPKFWSVLCFVPLLIPSKMIRPTQISILDVGQGQSIFIQDQTQRILLDT GGYYDESKFSIGKQVVVPFLKSQGVHQLDRVILTHLDQDHSGGLPAVLQLIPTRMIQANEEIKDLSIPFSLCHSGQTWET SELKIQILSPKLENLQSTVFNRNEASCVMYLQLKQASDLKYFLMMGDAGWETEYQLLQQYPDLKVDVLILGHHGSQHSSS YDFLKRYHPKIAIASAGFENGYGHPSAEVSNRLQDLNIPLLSTTDKGAIHFKFDSGNEQTEFYRQSYKWLQR
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=662, Percent_Identity=26.4350453172205, Blast_Score=175, Evalue=1e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 90539; Mature: 90539
Theoretical pI: Translated: 8.59; Mature: 8.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMGRTLECIEPFTCITGILTFLIWAIYFYKKRKHQIGSGLRALVILISASFLFGIGAQYA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH DSALEERLYYKIMHSDTHEVIIYVHQMGESSDKGIKQVAEVLNIHPDVVNWVFYIDQSLL HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH GAEKSSSLELGQYYRITAKTKPIHSYALEGAFDVEKWFVQQNWQATAQVYRIQTLSKQEV CCCCCCCCCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH MSAGFYLHVKQQQTWRAQFLQSVEKLRLKFRNYFIDSSLSHHALLLALLTGDRSLLNPEL HHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHH EQQFQRFGISHLLAISGPHVLIFAAMVSWIFTRLIHRFKPEIYLSIPRQKLVLLPFLMCV HHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHH ILYCAFVGFEIPALRTLFTVMLGSILLLIRHHLSAFSLLVLSASLLLWMDPFSILSAAFW HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LSYGACFILIRIYQDMTQAQQFHQTRFTRGMQILKALVRSQWKIFVALMPLTLIIFKQIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WIAPLSNLIAIPILGGIIVPLDIMAGCLWLFIPSLGNLLFYLNNSLLELFIGILKGLDHL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNPQLQYYAFTPLLLICLTLAIVILFLPKGVVPKFWSVLCFVPLLIPSKMIRPTQISILD HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE VGQGQSIFIQDQTQRILLDTGGYYDESKFSIGKQVVVPFLKSQGVHQLDRVILTHLDQDH CCCCCEEEEECCCCEEEEECCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCC SGGLPAVLQLIPTRMIQANEEIKDLSIPFSLCHSGQTWETSELKIQILSPKLENLQSTVF CCCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHC NRNEASCVMYLQLKQASDLKYFLMMGDAGWETEYQLLQQYPDLKVDVLILGHHGSQHSSS CCCCCCEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCH YDFLKRYHPKIAIASAGFENGYGHPSAEVSNRLQDLNIPLLSTTDKGAIHFKFDSGNEQT HHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCHH EFYRQSYKWLQR HHHHHHHHHHCC >Mature Secondary Structure MMGRTLECIEPFTCITGILTFLIWAIYFYKKRKHQIGSGLRALVILISASFLFGIGAQYA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH DSALEERLYYKIMHSDTHEVIIYVHQMGESSDKGIKQVAEVLNIHPDVVNWVFYIDQSLL HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH GAEKSSSLELGQYYRITAKTKPIHSYALEGAFDVEKWFVQQNWQATAQVYRIQTLSKQEV CCCCCCCCCCCCEEEEEECCCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH MSAGFYLHVKQQQTWRAQFLQSVEKLRLKFRNYFIDSSLSHHALLLALLTGDRSLLNPEL HHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCHHH EQQFQRFGISHLLAISGPHVLIFAAMVSWIFTRLIHRFKPEIYLSIPRQKLVLLPFLMCV HHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHH ILYCAFVGFEIPALRTLFTVMLGSILLLIRHHLSAFSLLVLSASLLLWMDPFSILSAAFW HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LSYGACFILIRIYQDMTQAQQFHQTRFTRGMQILKALVRSQWKIFVALMPLTLIIFKQIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WIAPLSNLIAIPILGGIIVPLDIMAGCLWLFIPSLGNLLFYLNNSLLELFIGILKGLDHL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNPQLQYYAFTPLLLICLTLAIVILFLPKGVVPKFWSVLCFVPLLIPSKMIRPTQISILD HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE VGQGQSIFIQDQTQRILLDTGGYYDESKFSIGKQVVVPFLKSQGVHQLDRVILTHLDQDH CCCCCEEEEECCCCEEEEECCCCCCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCC SGGLPAVLQLIPTRMIQANEEIKDLSIPFSLCHSGQTWETSELKIQILSPKLENLQSTVF CCCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHC NRNEASCVMYLQLKQASDLKYFLMMGDAGWETEYQLLQQYPDLKVDVLILGHHGSQHSSS CCCCCCEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCCH YDFLKRYHPKIAIASAGFENGYGHPSAEVSNRLQDLNIPLLSTTDKGAIHFKFDSGNEQT HHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCHH EFYRQSYKWLQR HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]