Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 50085624

GI number: 50085624

Start: 2506793

End: 2507485

Strand: Direct

Name: ydhC [H]

Synonym: ACIAD2547

Alternate gene names: 50085624

Gene position: 2506793-2507485 (Clockwise)

Preceding gene: 50085611

Following gene: 50085625

Centisome position: 69.66

GC content: 42.28

Gene sequence:

>693_bases
TTGAGTGAGTATATGACCTTGAATCTAAAAATCGAACAGCCGCCTATTACATTAAGAGAGATGGCATTGACCAATCTGCG
CAATGCCATCATTACAGGCTATTTCCCAGCTGGAAAAAGACTGGTTGAACGTGTCCTCTGTGAAGAATTAGGGGTGAGTC
GGACGGTGGTACGTGAAGCGATTCGTTATCTGGAAGCAGAAGGATTAGTCGAAACTTTGCCCAATAAAGGCCCGATTGTA
TCGGTATTAAACTGGCACGTTGCACAGCAAATCTATGATATTCGTTTATTACTTGAACAAAGTGCAGTCGTTGACTGTAC
TGAAAAACTTGACGAACGAAACAGCCAGAAGCTTCAAAGCCATCTACAAAAATTGCATGACGCGTTTGAAGACGGAAAAA
TGCAGGATTTACTCAGTGTTTCCAGAGATCTATATCGTTTTATTTTTGAAATCGCCAATCATGACATTGCTTGGGAAGTG
GTTGAGCGCCTCAATGGACGAATCAGTCGCTTACGTGCCATGACCATTAATTCACCACATCGTGCGGTATCGGGTTATGA
ACGCATTTGTACGATTGTTGAAGCGATTTTAAAAAAGGATACCAATGCAGCCAAAGCAGCCGTTGCTGCACATCTACAAG
AAGCGTCGACAATCGCCAAGCAAATTCTTGAAAATCAAACACAAGATGATTAA

Upstream 100 bases:

>100_bases
ACACAATATTATGGTATACAATAGTACAGACTACTCAGATACCATTTTTTTTGCTAATATTGATGCTTATAAATGTAACT
AAAAATTACACAAATAAATT

Downstream 100 bases:

>100_bases
ATTTAAGGAGTTATAGATGACAGCTTACTGGATCGCACACGTTACTATCCATGATATGCAGCAATATCAGGAATATATGA
AACTTGCCCCTGCGGCTTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSEYMTLNLKIEQPPITLREMALTNLRNAIITGYFPAGKRLVERVLCEELGVSRTVVREAIRYLEAEGLVETLPNKGPIV
SVLNWHVAQQIYDIRLLLEQSAVVDCTEKLDERNSQKLQSHLQKLHDAFEDGKMQDLLSVSRDLYRFIFEIANHDIAWEV
VERLNGRISRLRAMTINSPHRAVSGYERICTIVEAILKKDTNAAKAAVAAHLQEASTIAKQILENQTQDD

Sequences:

>Translated_230_residues
MSEYMTLNLKIEQPPITLREMALTNLRNAIITGYFPAGKRLVERVLCEELGVSRTVVREAIRYLEAEGLVETLPNKGPIV
SVLNWHVAQQIYDIRLLLEQSAVVDCTEKLDERNSQKLQSHLQKLHDAFEDGKMQDLLSVSRDLYRFIFEIANHDIAWEV
VERLNGRISRLRAMTINSPHRAVSGYERICTIVEAILKKDTNAAKAAVAAHLQEASTIAKQILENQTQDD
>Mature_229_residues
SEYMTLNLKIEQPPITLREMALTNLRNAIITGYFPAGKRLVERVLCEELGVSRTVVREAIRYLEAEGLVETLPNKGPIVS
VLNWHVAQQIYDIRLLLEQSAVVDCTEKLDERNSQKLQSHLQKLHDAFEDGKMQDLLSVSRDLYRFIFEIANHDIAWEVV
ERLNGRISRLRAMTINSPHRAVSGYERICTIVEAILKKDTNAAKAAVAAHLQEASTIAKQILENQTQDD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=197, Percent_Identity=25.3807106598985, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87081914, Length=146, Percent_Identity=30.8219178082192, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26149; Mature: 26018

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEYMTLNLKIEQPPITLREMALTNLRNAIITGYFPAGKRLVERVLCEELGVSRTVVREA
CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
IRYLEAEGLVETLPNKGPIVSVLNWHVAQQIYDIRLLLEQSAVVDCTEKLDERNSQKLQS
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
HLQKLHDAFEDGKMQDLLSVSRDLYRFIFEIANHDIAWEVVERLNGRISRLRAMTINSPH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCH
RAVSGYERICTIVEAILKKDTNAAKAAVAAHLQEASTIAKQILENQTQDD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SEYMTLNLKIEQPPITLREMALTNLRNAIITGYFPAGKRLVERVLCEELGVSRTVVREA
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
IRYLEAEGLVETLPNKGPIVSVLNWHVAQQIYDIRLLLEQSAVVDCTEKLDERNSQKLQS
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
HLQKLHDAFEDGKMQDLLSVSRDLYRFIFEIANHDIAWEVVERLNGRISRLRAMTINSPH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCH
RAVSGYERICTIVEAILKKDTNAAKAAVAAHLQEASTIAKQILENQTQDD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]