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The map label for this gene is rnd [H]

Identifier: 50085406

GI number: 50085406

Start: 2276630

End: 2277826

Strand: Reverse

Name: rnd [H]

Synonym: ACIAD2310

Alternate gene names: 50085406

Gene position: 2277826-2276630 (Counterclockwise)

Preceding gene: 50085407

Following gene: 50085405

Centisome position: 63.3

GC content: 38.35

Gene sequence:

>1197_bases
GTGGTATATATATGCCAGAATCTCTATTGCTCATTGTGGCTAAATCAGGAAAACATGTTTCAGTTTATCCAGCAGCAAGA
TCAACTTGCTGATGTTTTGTCGTTAATGGATCAATGTTCAATTTATGGACTTGATACTGAATTTATCAAAGTCGATACAC
TATGGCCGAAATTGGGTGTATTTCAAATAAACCTGAATGGCCAGGTTTATTTACTAGATGGAACTGCACTGGATCTGAGC
ATCTTCTGGCAAAAACTCTATGCCTCAAAACAAAATGTATTTCATGCATGTGGTGAAGATATCGATCTGATTTATCATTA
TGCGCAGCAAAAATTTTTAGAAAATGTATTTGATACCCAGGTAGGATTGTCTTTTTTAGGGCACGGTCTACAAGTCAGTT
ATCAGGCGGCATTAAAGCTCGTTTTAGATATTGAAATTGAAAAAGATCAGACACGTTCGGACTGGCTTGCACGTCCACTC
AGCGATGAGCAATTGAAATATGCTGCCAATGATGTGCTCTATCTGCTTAAGCTTTCAGATCAAATAAAACATCAATTACA
AGAAAAGCAGCTTTACGATTATGTACTTGAAGATTGTCGTCATTTAACCCAAGAAATTGGTACAGATACGCCACAGCATT
TATTGTATACAGATGTAGGAAATTATCGCCATTCCAGACGTCAATTGATGCAGTTGCAGCAATTAATGGTCTGGCGTGAG
CAGTTGATTAAAGCCATTAATCAGCCTCGTAGTTTTATTCTAAGAAACTCAACCATGATTGATCTGGTTGAAAAAAATCC
TAGAAATACATTCCAGTTATCACAAGTCAAAGAAATTAGACCCAATGTGATTCGTGAGCATGGCAAAACCATTCTGGATT
TGTTGAAGTTCTTACCAGAAGAGCATGAATGGCCACTGCGTATGGCAAAACCAATTCGTCATTCATCTCAAGACGTAACT
GATCAAATGACTCAACTCATCGAGCAGGTTGTTGAGCAAACCCAAATTCCCAAAGAAGTGCTCATCCGTAAAAAATGGTT
AAATGCGCTGTATCAGCATGTCGTCTTTCATCGCAGTGAAGATGAGTTGCCAGAATACTTATTAGGCTGGCGCTACGAAA
TGCTCACACGTCCATTGATCCAGATTTTAAAACAGGATGTAAAATATCTGTCTACCCAGATGAAAATAGACCGTTAG

Upstream 100 bases:

>100_bases
GATTAAAATTGACTATTTGTTTAAAAAGTAAACGTTGCAGTCATTTTGTTTAAAAAATAAAGTATTAATAACAGTTTGTC
TGGCAAAACATCAGATCTAA

Downstream 100 bases:

>100_bases
TATTTCTTGGACTGATGCGTTAAAAAAAGCCTAATGTATCGGTTCAATTTTTGATGTATGCTTTTTTTGAGTTTTGAGAG
TGTTCAATATGCATTGTGAT

Product: ribonuclease D, processes tRNA

Products: NA

Alternate protein names: RNase D [H]

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MVYICQNLYCSLWLNQENMFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTALDLS
IFWQKLYASKQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQAALKLVLDIEIEKDQTRSDWLARPL
SDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLEDCRHLTQEIGTDTPQHLLYTDVGNYRHSRRQLMQLQQLMVWRE
QLIKAINQPRSFILRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLPEEHEWPLRMAKPIRHSSQDVT
DQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGWRYEMLTRPLIQILKQDVKYLSTQMKIDR

Sequences:

>Translated_398_residues
MVYICQNLYCSLWLNQENMFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTALDLS
IFWQKLYASKQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQAALKLVLDIEIEKDQTRSDWLARPL
SDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLEDCRHLTQEIGTDTPQHLLYTDVGNYRHSRRQLMQLQQLMVWRE
QLIKAINQPRSFILRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLPEEHEWPLRMAKPIRHSSQDVT
DQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGWRYEMLTRPLIQILKQDVKYLSTQMKIDR
>Mature_398_residues
MVYICQNLYCSLWLNQENMFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTALDLS
IFWQKLYASKQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQAALKLVLDIEIEKDQTRSDWLARPL
SDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLEDCRHLTQEIGTDTPQHLLYTDVGNYRHSRRQLMQLQQLMVWRE
QLIKAINQPRSFILRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLPEEHEWPLRMAKPIRHSSQDVT
DQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGWRYEMLTRPLIQILKQDVKYLSTQMKIDR

Specific function: Cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3' maturation of several stable RNAs [H]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HRDC domain [H]

Homologues:

Organism=Escherichia coli, GI1788105, Length=380, Percent_Identity=25.2631578947368, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR002121
- InterPro:   IPR010997
- InterPro:   IPR006292
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00570 HRDC [H]

EC number: =3.1.13.5 [H]

Molecular weight: Translated: 47233; Mature: 47233

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50967 HRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYICQNLYCSLWLNQENMFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGV
CEEEECCCHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCCE
FQINLNGQVYLLDGTALDLSIFWQKLYASKQNVFHACGEDIDLIYHYAQQKFLENVFDTQ
EEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VGLSFLGHGLQVSYQAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSD
HHHHHHCCCCEEEHHHHHHHHHEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
QIKHQLQEKQLYDYVLEDCRHLTQEIGTDTPQHLLYTDVGNYRHSRRQLMQLQQLMVWRE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
QLIKAINQPRSFILRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLPE
HHHHHHCCCHHHHCCCCCEEEHECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EHEWPLRMAKPIRHSSQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSE
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
DELPEYLLGWRYEMLTRPLIQILKQDVKYLSTQMKIDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVYICQNLYCSLWLNQENMFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGV
CEEEECCCHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCCE
FQINLNGQVYLLDGTALDLSIFWQKLYASKQNVFHACGEDIDLIYHYAQQKFLENVFDTQ
EEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
VGLSFLGHGLQVSYQAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSD
HHHHHHCCCCEEEHHHHHHHHHEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
QIKHQLQEKQLYDYVLEDCRHLTQEIGTDTPQHLLYTDVGNYRHSRRQLMQLQQLMVWRE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
QLIKAINQPRSFILRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLPE
HHHHHHCCCHHHHCCCCCEEEHECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EHEWPLRMAKPIRHSSQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSE
CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
DELPEYLLGWRYEMLTRPLIQILKQDVKYLSTQMKIDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]