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The map label for this gene is cydB [H]

Identifier: 50085389

GI number: 50085389

Start: 2263260

End: 2264405

Strand: Direct

Name: cydB [H]

Synonym: ACIAD2291

Alternate gene names: 50085389

Gene position: 2263260-2264405 (Clockwise)

Preceding gene: 50085388

Following gene: 50085390

Centisome position: 62.89

GC content: 43.28

Gene sequence:

>1146_bases
ATGATCGAATATGAACTCCTAAAAATTATCTGGTGGGTCTTGGTAGGCGTACTATTGATTGGTTTTGCATTGACTGATGG
TTTTGATATGGGCTCTATGGCAATTATGCCATTTGTTGGAAAAACCGATTCAGAACGTCGTGCAGCAATCAATACTATCG
CACCTCACTGGGATGGAAACCAGGTGTGGTTTATTACAGCAGGCGGTGCTTTATTTGCCGCTTGGCCAATGGTCTATGCT
GTTGCTTTTTCAGGTTTATACTGGGCGTTATTATTGGTCCTATTCGCGCTGTTTCTTCGACCAGTGGGTTTTGACTATCG
TTCAAAACTGGAAAATACTCAGTGGCGCAATTCTTGGGACTGGGCTCTGAGTATTGGAGGAGCTGTTCCTGCACTTGTGT
TTGGTGTCGCGTTTGGAAATCTATTTTTAGGTGTTCCCTTCTCACTTGACGATACCTTACGTTCCGAATATACAGGTAGT
TTCTTTGCTTTACTCAATCCATTTGCCTTACTGTGTGGCATTGTGAGTCTGTCAATGCTATGCGCGCATGGCGGTGCATG
GTTGATGCTTCGTACAGATGGTGTACTCAAACAACGTTCTGCCAAAGCGACTCAGATTATGGGAATTGTATTCCTGATCT
GCTTTATCGCAGCTGGCGCGTGGTTGTATTTTGCTCAAGTACCAGGTTATAGCTATGCAGTTCCTATCGATCCAAATGCT
GCTTTGAATCCATTGGCAAAAAAAGTTGTGACCAACGCCAATGCTGGCTGGATGAATAACTATCATCTTTATCCTGTGAG
TATGCTGGCGCCGATTGTTGCAATTATTGGGGCTTTAGTCCTCATTGTAGGTGCATCAAAATCGAAAGCTGGTCTTAGCT
TTACAGGAACGAGTCTTGCAATTATTGGAGCAATCTTGACCGCAGGTTTTGCTTTATTCCCCTTCCTGCTTCCTTCAAGT
ATTAATCCAGTTTCAAGCTTAACCATGTGGGATGCCGTTTCAAGCCATCGTACACTTGGAGTGATGACTGTTGCAGCCTG
CATTTTTGTACCGCTTATTCTAATTTATACCTCTTGGTCTTATTACAAGATGTGGGGTGTAATTACCAACAAGCACATCG
AAGCAAATTCGCATAGTTTGTATTAA

Upstream 100 bases:

>100_bases
TGATCAAGTTTGCCCGCTTAGGTCCAAGCTCTCTACATACAGGTAAATATCACTTTGAAAAACAGGAAACTCATCATCCT
CTAGCTGGGGAGGTACAATC

Downstream 100 bases:

>100_bases
GAAAAACGAGGAGAAAAGTTATGTGGTACTTTGCCTGGATTTTGGGAATATTAATGGCCTGCTTTGCAGGAGTACTCAGT
GCGTTATATATCGAGCACCA

Product: cytochrome d terminal oxidase polypeptide subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGNQVWFITAGGALFAAWPMVYA
VAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWDWALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGS
FFALLNPFALLCGIVSLSMLCAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA
ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLAIIGAILTAGFALFPFLLPSS
INPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWSYYKMWGVITNKHIEANSHSLY

Sequences:

>Translated_381_residues
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGNQVWFITAGGALFAAWPMVYA
VAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWDWALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGS
FFALLNPFALLCGIVSLSMLCAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA
ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLAIIGAILTAGFALFPFLLPSS
INPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWSYYKMWGVITNKHIEANSHSLY
>Mature_381_residues
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGNQVWFITAGGALFAAWPMVYA
VAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWDWALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGS
FFALLNPFALLCGIVSLSMLCAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA
ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLAIIGAILTAGFALFPFLLPSS
INPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWSYYKMWGVITNKHIEANSHSLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=381, Percent_Identity=55.6430446194226, Blast_Score=420, Evalue=1e-119,
Organism=Escherichia coli, GI1787213, Length=381, Percent_Identity=49.0813648293963, Blast_Score=379, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41469; Mature: 41469

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCC
QVWFITAGGALFAAWPMVYAVAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCC
WALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGSFFALLNPFALLCGIVSLSML
CEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
CAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA
HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCC
ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLA
HHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHH
IIGAILTAGFALFPFLLPSSINPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWS
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
YYKMWGVITNKHIEANSHSLY
HHHHHHHHCCCEECCCCCCCC
>Mature Secondary Structure
MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGN
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCC
QVWFITAGGALFAAWPMVYAVAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCC
WALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGSFFALLNPFALLCGIVSLSML
CEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
CAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA
HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCC
ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLA
HHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHHHH
IIGAILTAGFALFPFLLPSSINPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWS
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
YYKMWGVITNKHIEANSHSLY
HHHHHHHHCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]