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The map label for this gene is cydA [H]

Identifier: 50085388

GI number: 50085388

Start: 2261674

End: 2263263

Strand: Direct

Name: cydA [H]

Synonym: ACIAD2290

Alternate gene names: 50085388

Gene position: 2261674-2263263 (Clockwise)

Preceding gene: 50085387

Following gene: 50085389

Centisome position: 62.85

GC content: 42.89

Gene sequence:

>1590_bases
TTGATGATTTCTGAAAGCGTGGTCGATCTTTCGCGGTTCCAATTTGCAATGACCGCGATGTATCACTTTCTATTCGTCCC
TCTCACTCTCGGTCTAGCATTTATCTTGGCCATCATGGAAACCACCTATGTGATTTCTGGCAAAGAAATTTATAAAGATA
TGACCAAATTTTGGGGAAAATTATTTGGTATTAACTTTGCCTTGGGTGTTACCACTGGACTCACCATGGAGTTTCAGTTT
GGAACGAACTGGGCCTATTATTCTCATTATGTAGGTGACATTTTTGGTGCTCCACTCGCCATTGAAGGTCTGATGGCTTT
CTTTCTTGAGTCGACATTTATTGGTCTATTTTTCTTTGGATGGGATCGCCTATCTAAGGTACAACATTTAGGCGTCACTT
GGCTGGTAGCAATCGGCTCTAATATGTCAGCGCTCTGGATTTTGGTCGCAAATGGCTGGATGCAAAACCCTGTAGGTGCC
GCATTTAATTACCAAACGATGCGTATGGAACTGGCTGACTTCGGTGCGCTTATTTTCAATCCAGTTGCTCAGGTTAAATT
TGTTCATACCGTCTCAGCAGGTTATGTCACTGGTGCCATCTTCGTACTTGCAATTTCAAGTTTTTATCTGCTTAAAAAAC
GAGATTTACCTTTTGCACGTCGTTCATTTGCAATTGCAGCTATTTTCGGCATGGCCTCGGTTCTCTCTGTCATCTTACTC
GGAGATGAATCTGGTTATGAGCTTGGTGATGTTCAAAAAGCAAAACTTGCCGCAATTGAATCGGAATGGGAAACTGAACC
CGCACCAGCTAGCTTTACGTTATTTGGTGTACCAAACCAGCAGGAAATGCGAACTGATTATGCCATTAAAATCCCTTACG
CATTAGGACTGATTGCAACACGTTCAACTACAGGCCAAGTCACAGGTATTAAAGACCTGATGAAACAGCACGAAGCCCGT
ATCCGTAACGGTATGGTGGCGTATAGCGAACTTGAAAAATTGCGTGCAGGTGACCGCTCGGCGAGCTTATTGGCTTCATT
TGAGAAAAATCAGAAAGATCTTGGCTATGGTTTACTTTTAAAGAAATATTCACCTAACGTGGTTGATGCAACTGAAGCGC
ATATCCAATCCGCAGTCAAAGATTCTATTCCAAATGTAAAAGCCTTGTTCTTTTCATTCCGGATTATGGTCGCAGCTGGT
TTTCTTATGCTGTTGTTATTTATCTTGGCAACTTGGTCAGTTGCAAAACGCAATGCCGAAGATAAACCTTGGTTACTCAA
ATTTGCACTGTTTGCGCTACCCTTGCCTTGGATTGCCGCGCAAACGGGTTGGTACGTTGCAGAAGGTGGCCGTCAACCGT
GGACGATTGGCGAAGTTCTTCCAACACATCTTTCAACATCTAGTTTAAGCAGTGGCGATGTATGGGGATCTATTGCTGCA
TTGGCTGCTTTCTATACGGTTCTTTTAGTTATTGAAATGTATTTGATGATCAAGTTTGCCCGCTTAGGTCCAAGCTCTCT
ACATACAGGTAAATATCACTTTGAAAAACAGGAAACTCATCATCCTCTAGCTGGGGAGGTACAATCATGA

Upstream 100 bases:

>100_bases
TCAAACATATCTGGTTTGATGCTCCTACGATTCCCAAAAATTTTGACAATCAAGTCGCCGAGCATATTGCTGGCGCTCCA
TCCCAAATCAAGGAGACACG

Downstream 100 bases:

>100_bases
TCGAATATGAACTCCTAAAAATTATCTGGTGGGTCTTGGTAGGCGTACTATTGATTGGTTTTGCATTGACTGATGGTTTT
GATATGGGCTCTATGGCAAT

Product: cytochrome d terminal oxidase, polypeptide subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MMISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFQF
GTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKVQHLGVTWLVAIGSNMSALWILVANGWMQNPVGA
AFNYQTMRMELADFGALIFNPVAQVKFVHTVSAGYVTGAIFVLAISSFYLLKKRDLPFARRSFAIAAIFGMASVLSVILL
GDESGYELGDVQKAKLAAIESEWETEPAPASFTLFGVPNQQEMRTDYAIKIPYALGLIATRSTTGQVTGIKDLMKQHEAR
IRNGMVAYSELEKLRAGDRSASLLASFEKNQKDLGYGLLLKKYSPNVVDATEAHIQSAVKDSIPNVKALFFSFRIMVAAG
FLMLLLFILATWSVAKRNAEDKPWLLKFALFALPLPWIAAQTGWYVAEGGRQPWTIGEVLPTHLSTSSLSSGDVWGSIAA
LAAFYTVLLVIEMYLMIKFARLGPSSLHTGKYHFEKQETHHPLAGEVQS

Sequences:

>Translated_529_residues
MMISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFQF
GTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKVQHLGVTWLVAIGSNMSALWILVANGWMQNPVGA
AFNYQTMRMELADFGALIFNPVAQVKFVHTVSAGYVTGAIFVLAISSFYLLKKRDLPFARRSFAIAAIFGMASVLSVILL
GDESGYELGDVQKAKLAAIESEWETEPAPASFTLFGVPNQQEMRTDYAIKIPYALGLIATRSTTGQVTGIKDLMKQHEAR
IRNGMVAYSELEKLRAGDRSASLLASFEKNQKDLGYGLLLKKYSPNVVDATEAHIQSAVKDSIPNVKALFFSFRIMVAAG
FLMLLLFILATWSVAKRNAEDKPWLLKFALFALPLPWIAAQTGWYVAEGGRQPWTIGEVLPTHLSTSSLSSGDVWGSIAA
LAAFYTVLLVIEMYLMIKFARLGPSSLHTGKYHFEKQETHHPLAGEVQS
>Mature_529_residues
MMISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGKLFGINFALGVTTGLTMEFQF
GTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFGWDRLSKVQHLGVTWLVAIGSNMSALWILVANGWMQNPVGA
AFNYQTMRMELADFGALIFNPVAQVKFVHTVSAGYVTGAIFVLAISSFYLLKKRDLPFARRSFAIAAIFGMASVLSVILL
GDESGYELGDVQKAKLAAIESEWETEPAPASFTLFGVPNQQEMRTDYAIKIPYALGLIATRSTTGQVTGIKDLMKQHEAR
IRNGMVAYSELEKLRAGDRSASLLASFEKNQKDLGYGLLLKKYSPNVVDATEAHIQSAVKDSIPNVKALFFSFRIMVAAG
FLMLLLFILATWSVAKRNAEDKPWLLKFALFALPLPWIAAQTGWYVAEGGRQPWTIGEVLPTHLSTSSLSSGDVWGSIAA
LAAFYTVLLVIEMYLMIKFARLGPSSLHTGKYHFEKQETHHPLAGEVQS

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=514, Percent_Identity=70.4280155642023, Blast_Score=776, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=56.3492063492063, Blast_Score=592, Evalue=1e-170,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58675; Mature: 58675

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHH
LFGINFALGVTTGLTMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFG
HHCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WDRLSKVQHLGVTWLVAIGSNMSALWILVANGWMQNPVGAAFNYQTMRMELADFGALIFN
HHHHHHHHHCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
PVAQVKFVHTVSAGYVTGAIFVLAISSFYLLKKRDLPFARRSFAIAAIFGMASVLSVILL
HHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEE
GDESGYELGDVQKAKLAAIESEWETEPAPASFTLFGVPNQQEMRTDYAIKIPYALGLIAT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHCCCCEEECCHHHEEEEE
RSTTGQVTGIKDLMKQHEARIRNGMVAYSELEKLRAGDRSASLLASFEKNQKDLGYGLLL
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE
KKYSPNVVDATEAHIQSAVKDSIPNVKALFFSFRIMVAAGFLMLLLFILATWSVAKRNAE
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DKPWLLKFALFALPLPWIAAQTGWYVAEGGRQPWTIGEVLPTHLSTSSLSSGDVWGSIAA
CCCHHHHHHHHHCCCCHHHHCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHH
LAAFYTVLLVIEMYLMIKFARLGPSSLHTGKYHFEKQETHHPLAGEVQS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMISESVVDLSRFQFAMTAMYHFLFVPLTLGLAFILAIMETTYVISGKEIYKDMTKFWGK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHH
LFGINFALGVTTGLTMEFQFGTNWAYYSHYVGDIFGAPLAIEGLMAFFLESTFIGLFFFG
HHCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
WDRLSKVQHLGVTWLVAIGSNMSALWILVANGWMQNPVGAAFNYQTMRMELADFGALIFN
HHHHHHHHHCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
PVAQVKFVHTVSAGYVTGAIFVLAISSFYLLKKRDLPFARRSFAIAAIFGMASVLSVILL
HHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEE
GDESGYELGDVQKAKLAAIESEWETEPAPASFTLFGVPNQQEMRTDYAIKIPYALGLIAT
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHCCCCEEECCHHHEEEEE
RSTTGQVTGIKDLMKQHEARIRNGMVAYSELEKLRAGDRSASLLASFEKNQKDLGYGLLL
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE
KKYSPNVVDATEAHIQSAVKDSIPNVKALFFSFRIMVAAGFLMLLLFILATWSVAKRNAE
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DKPWLLKFALFALPLPWIAAQTGWYVAEGGRQPWTIGEVLPTHLSTSSLSSGDVWGSIAA
CCCHHHHHHHHHCCCCHHHHCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHH
LAAFYTVLLVIEMYLMIKFARLGPSSLHTGKYHFEKQETHHPLAGEVQS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]