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The map label for this gene is yqhC [H]

Identifier: 50084985

GI number: 50084985

Start: 1845891

End: 1846157

Strand: Direct

Name: yqhC [H]

Synonym: ACIAD1840

Alternate gene names: 50084985

Gene position: 1845891-1846157 (Clockwise)

Preceding gene: 50084984

Following gene: 50084986

Centisome position: 51.29

GC content: 40.45

Gene sequence:

>267_bases
ATGGATGAGTTAGCAGAAAGAGTCTTTATGAGTCCATCAACTTTCCGACAGCATTTTCGTGAAGTAACAGGAATGAGTCC
ATTACAATATCAAAAACAACTGCGTTTACAAGAAGCACGTCATTTAATGCTCAATCATAATTTAGATGCGGGGAGAGCTG
CGATTTCCGTAGGATATGAAAGTGCATCGCAATTTAGCCGTGAATATTCTCGCTTGTTTGGAGAGTCTCCGCAGCGGGAT
ATTCAACGAATTAAGCAGAACACATAA

Upstream 100 bases:

>100_bases
GGTATTTCATTTACGCCAACTGGTAAAGTCTGGTTCGGTAAATCAAAAGATTCATCAAATCGTGAATTGGCTAAAAAGCA
ATTTCGCACAACCCATCCGT

Downstream 100 bases:

>100_bases
AAGATTGTTATCAGCGATTTTACTTCAATTTAGATTTCAAGGGGCTAATTTTTAGAGCTAAAAGACTTGCTAGGAGCCTT
AGGCAGGACGTTATGACAAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYESASQFSREYSRLFGESPQRD
IQRIKQNT

Sequences:

>Translated_88_residues
MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYESASQFSREYSRLFGESPQRD
IQRIKQNT
>Mature_88_residues
MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYESASQFSREYSRLFGESPQRD
IQRIKQNT

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=85, Percent_Identity=47.0588235294118, Blast_Score=82, Evalue=6e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 10318; Mature: 10318

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE
CHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SASQFSREYSRLFGESPQRDIQRIKQNT
HHHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure
MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE
CHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
SASQFSREYSRLFGESPQRDIQRIKQNT
HHHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]