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The map label for this gene is yomI [H]

Identifier: 50084820

GI number: 50084820

Start: 1668063

End: 1668578

Strand: Reverse

Name: yomI [H]

Synonym: ACIAD1663

Alternate gene names: 50084820

Gene position: 1668578-1668063 (Counterclockwise)

Preceding gene: 50084821

Following gene: 50084816

Centisome position: 46.37

GC content: 38.18

Gene sequence:

>516_bases
CTGTTTAGCTTATCTACGTGTATTCTATTTACAGGTTGTACCGCACTTGGGCCACATAGTGGAACTTTAGCACAACGCTC
TTCCAAACTATCTAATGGACTTCAAAAAGCTTATGCTGTTTCGCCATCTACAGCAAATCGCTTATCTCCGATGATTATCC
AAAGTGCAGATCGTTATGAAGTACCTCCTCTACTCATTGCAGCGACTATTCGTCAGGAATCGAATTATAATTCTTATGCT
CGTTCCTCTGGTGGAGCAATTGGTTTAGCACAAATTATTCCAAGCTACTGGCAACAATCATGTCCAGGAAATCTCTCAGA
TGAATATACCAATATCCAATGCAGTGCTTACATTTTAGGTCATTACAATCAAATTGCTGGAAGTTGGTTTAAAGCTAGTG
CTTATTATAATGTTGGTCCAACAGGTTATAAATCTAGTTTCTGGACACGCCACAAAGCAAAAAAATATGCACGTTCAGTA
AAACGTTTTGAGAAATCTCTTAAAAAAGAGCTTTGA

Upstream 100 bases:

>100_bases
TCCAAGAATCAAATTTTTGGATGGGTTGTTTATCTTGATCTCTTATTTTCAACCTCACTTGAAACTAAAAAATTATAGAA
ATTTTTATTCGAAGAAAGTA

Downstream 100 bases:

>100_bases
TTAGCTTAGGCTATTTTAATACTTGCTCAGATGTATTGCAGCATACCTATAAAAGATTTTAGACTAGGCATGCTGTTACA
TGAGTGAATATATTTTTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MFSLSTCILFTGCTALGPHSGTLAQRSSKLSNGLQKAYAVSPSTANRLSPMIIQSADRYEVPPLLIAATIRQESNYNSYA
RSSGGAIGLAQIIPSYWQQSCPGNLSDEYTNIQCSAYILGHYNQIAGSWFKASAYYNVGPTGYKSSFWTRHKAKKYARSV
KRFEKSLKKEL

Sequences:

>Translated_171_residues
MFSLSTCILFTGCTALGPHSGTLAQRSSKLSNGLQKAYAVSPSTANRLSPMIIQSADRYEVPPLLIAATIRQESNYNSYA
RSSGGAIGLAQIIPSYWQQSCPGNLSDEYTNIQCSAYILGHYNQIAGSWFKASAYYNVGPTGYKSSFWTRHKAKKYARSV
KRFEKSLKKEL
>Mature_171_residues
MFSLSTCILFTGCTALGPHSGTLAQRSSKLSNGLQKAYAVSPSTANRLSPMIIQSADRYEVPPLLIAATIRQESNYNSYA
RSSGGAIGLAQIIPSYWQQSCPGNLSDEYTNIQCSAYILGHYNQIAGSWFKASAYYNVGPTGYKSSFWTRHKAKKYARSV
KRFEKSLKKEL

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 10 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR008258
- InterPro:   IPR016047
- InterPro:   IPR010090
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 18854; Mature: 18854

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLSTCILFTGCTALGPHSGTLAQRSSKLSNGLQKAYAVSPSTANRLSPMIIQSADRYE
CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHCCCCCCC
VPPLLIAATIRQESNYNSYARSSGGAIGLAQIIPSYWQQSCPGNLSDEYTNIQCSAYILG
CCHHHHHHHHHHCCCCCHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC
HYNQIAGSWFKASAYYNVGPTGYKSSFWTRHKAKKYARSVKRFEKSLKKEL
CHHHHHCCHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFSLSTCILFTGCTALGPHSGTLAQRSSKLSNGLQKAYAVSPSTANRLSPMIIQSADRYE
CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHCCCCCCC
VPPLLIAATIRQESNYNSYARSSGGAIGLAQIIPSYWQQSCPGNLSDEYTNIQCSAYILG
CCHHHHHHHHHHCCCCCHHHHCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC
HYNQIAGSWFKASAYYNVGPTGYKSSFWTRHKAKKYARSVKRFEKSLKKEL
CHHHHHCCHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]