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The map label for this gene is kdsD [H]

Identifier: 50084653

GI number: 50084653

Start: 1480647

End: 1481624

Strand: Direct

Name: kdsD [H]

Synonym: ACIAD1482

Alternate gene names: 50084653

Gene position: 1480647-1481624 (Clockwise)

Preceding gene: 50084651

Following gene: 50084654

Centisome position: 41.14

GC content: 42.33

Gene sequence:

>978_bases
ATGACCCATGCTATCGATTTTAAAAAAATCGCACTTGAAACCATCTCTGTTGAACAACATGCAATAGATGTATTAGTTAA
TCAGATTGATGAACGATTTGATCAGGCGTGCGAAATTATTTTGCAGTGTCAGGGGCGGGTTGTTGTGACGGGTATGGGCA
AGTCAGGGCATATTGGTCGTAAAATGGCGGCTACATTTGCATCTACTGGTACACCTTCATTTTTCATGCATCCAGGTGAA
GCAGGTCATGGTGATTTGGGAATGCTAGTTCGTGGTGATGTCTTGATTGCGATTTCAAATTCAGGAAAAAGCGATGAGAT
CATGATGCTGATGCCATTGATCAAACATCTTGAGGTTCCCTTAATTACGATAAGTCGCGACGATAAAGGACCTATGCCAC
AAAATGCGGATATCGCGCTTACATTAGGCGATTCAAATGAAGCATGTCCTCTTGGTTTGGCACCCACTTCTAGTACGACA
GCAACTTTAGTACTTGGTGATGCGCTAGCAGTGGCTTTACTTGAAGCACGTGGCTTTACCGCAGATGATTTTGCACGTTC
GCATCCTGCAGGAGCGTTAGGCAAGCGTTTACTATTGCATGTTAAACATTTGATGCATACTCAACAGGAGTTACCCAAGG
TTTCTCCAGATACACCAATGAATCAAGTCTTATATGAAATTTCAAATAAACGACTTGGTTTGACAACGATTGTAGATGAA
AATGATCATTTGCTAGGAATCTTTACCGATGGCGATTTACGCCGACTGATCGATAAGCAGCAGGGCTTTGATGTTAATCT
CCCTGTGCGACAAGTGATGGTTGAGCATCCAGCGACCATATCGCAAGAAGCTCGTGCAGTAGAAGCATTGCAAAAATTAA
ATGAGAAAAAGATCAACCAGTTTGTTGTGGTTGATGACCAAAATAAAGTGATTGGTGTCATCAGTATGCATGACCTCATT
CAGGCAGGGGTAAGTTAA

Upstream 100 bases:

>100_bases
ACGTGACTTGAATAGACATATGCTAGAATAACGTAAATTTTCGCTTTAAAATCTTTGGTCTGTACAGTGTACAAAGATTC
TGTTATTTGAGCTATTTTTC

Downstream 100 bases:

>100_bases
TACATGGCATCTTATGCATTGATCGAACAGGCTCGTCACCTTGAAGCATTGGTTTTAGACGTTGATGGAATTCTGAGTGA
CGGTTTCGTGACGCTCACCA

Product: D-arabinose 5-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MTHAIDFKKIALETISVEQHAIDVLVNQIDERFDQACEIILQCQGRVVVTGMGKSGHIGRKMAATFASTGTPSFFMHPGE
AGHGDLGMLVRGDVLIAISNSGKSDEIMMLMPLIKHLEVPLITISRDDKGPMPQNADIALTLGDSNEACPLGLAPTSSTT
ATLVLGDALAVALLEARGFTADDFARSHPAGALGKRLLLHVKHLMHTQQELPKVSPDTPMNQVLYEISNKRLGLTTIVDE
NDHLLGIFTDGDLRRLIDKQQGFDVNLPVRQVMVEHPATISQEARAVEALQKLNEKKINQFVVVDDQNKVIGVISMHDLI
QAGVS

Sequences:

>Translated_325_residues
MTHAIDFKKIALETISVEQHAIDVLVNQIDERFDQACEIILQCQGRVVVTGMGKSGHIGRKMAATFASTGTPSFFMHPGE
AGHGDLGMLVRGDVLIAISNSGKSDEIMMLMPLIKHLEVPLITISRDDKGPMPQNADIALTLGDSNEACPLGLAPTSSTT
ATLVLGDALAVALLEARGFTADDFARSHPAGALGKRLLLHVKHLMHTQQELPKVSPDTPMNQVLYEISNKRLGLTTIVDE
NDHLLGIFTDGDLRRLIDKQQGFDVNLPVRQVMVEHPATISQEARAVEALQKLNEKKINQFVVVDDQNKVIGVISMHDLI
QAGVS
>Mature_324_residues
THAIDFKKIALETISVEQHAIDVLVNQIDERFDQACEIILQCQGRVVVTGMGKSGHIGRKMAATFASTGTPSFFMHPGEA
GHGDLGMLVRGDVLIAISNSGKSDEIMMLMPLIKHLEVPLITISRDDKGPMPQNADIALTLGDSNEACPLGLAPTSSTTA
TLVLGDALAVALLEARGFTADDFARSHPAGALGKRLLLHVKHLMHTQQELPKVSPDTPMNQVLYEISNKRLGLTTIVDEN
DHLLGIFTDGDLRRLIDKQQGFDVNLPVRQVMVEHPATISQEARAVEALQKLNEKKINQFVVVDDQNKVIGVISMHDLIQ
AGVS

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=322, Percent_Identity=53.7267080745342, Blast_Score=330, Evalue=5e-92,
Organism=Escherichia coli, GI87082151, Length=312, Percent_Identity=43.2692307692308, Blast_Score=263, Evalue=8e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 35267; Mature: 35136

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHAIDFKKIALETISVEQHAIDVLVNQIDERFDQACEIILQCQGRVVVTGMGKSGHIGR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCH
KMAATFASTGTPSFFMHPGEAGHGDLGMLVRGDVLIAISNSGKSDEIMMLMPLIKHLEVP
HHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEECCCCCCCCEEHHHHHHHHCCCC
LITISRDDKGPMPQNADIALTLGDSNEACPLGLAPTSSTTATLVLGDALAVALLEARGFT
EEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCC
ADDFARSHPAGALGKRLLLHVKHLMHTQQELPKVSPDTPMNQVLYEISNKRLGLTTIVDE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEEEC
NDHLLGIFTDGDLRRLIDKQQGFDVNLPVRQVMVEHPATISQEARAVEALQKLNEKKINQ
CCCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCE
FVVVDDQNKVIGVISMHDLIQAGVS
EEEEECCCCEEEEEEHHHHHHHCCC
>Mature Secondary Structure 
THAIDFKKIALETISVEQHAIDVLVNQIDERFDQACEIILQCQGRVVVTGMGKSGHIGR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCH
KMAATFASTGTPSFFMHPGEAGHGDLGMLVRGDVLIAISNSGKSDEIMMLMPLIKHLEVP
HHHHHHHCCCCCCEEECCCCCCCCCEEEEEECCEEEEECCCCCCCCEEHHHHHHHHCCCC
LITISRDDKGPMPQNADIALTLGDSNEACPLGLAPTSSTTATLVLGDALAVALLEARGFT
EEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCC
ADDFARSHPAGALGKRLLLHVKHLMHTQQELPKVSPDTPMNQVLYEISNKRLGLTTIVDE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEEEC
NDHLLGIFTDGDLRRLIDKQQGFDVNLPVRQVMVEHPATISQEARAVEALQKLNEKKINQ
CCCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCE
FVVVDDQNKVIGVISMHDLIQAGVS
EEEEECCCCEEEEEEHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]