Click here to switch to the map view.

The map label for this gene is fecI [H]

Identifier: 50084643

GI number: 50084643

Start: 1468041

End: 1468496

Strand: Direct

Name: fecI [H]

Synonym: ACIAD1469

Alternate gene names: 50084643

Gene position: 1468041-1468496 (Clockwise)

Preceding gene: 50084641

Following gene: 50084644

Centisome position: 40.79

GC content: 41.01

Gene sequence:

>456_bases
TTGAGACAAAAATTAGGTAATACTGATCAGGCCGCAGATCTGGTTCAGGACACATTTATTAAACTGCTACAAACCCGAGA
CGAGCTATTCGGCATTAAGGAACCGCGTGCTTATTTAACCTCGATTGCTAAAAACCTGCTCATTGACCAAGTGCGCCGTA
AACGCATTGAACAGGCCTATTTAGATGGCTTGAGTCAAATGAAATATATGCTTGACGCAGTGGCTTCACCCGAAGACCAA
ATGCAAATTATTCAAGCAATTAACCAGCTTTGCAAAGCACTCGAAGGGGTTTCTGAAAAAGCACAACAAGCTTTTATTTT
GCATTACCTCGAAGGCTATACCCATAAAGAAATTGCCGAGCGTTTAAATGTGTCGACCAAAATGATTCAAAAATATTTGG
CGAGTTGCTTAATTCAGTGCTACCAAAACCGACAAGACATGGACGCTTGCATTTAA

Upstream 100 bases:

>100_bases
CATCTTTAGGTTCCTTGTTTTGAGTCCAATTGCTGTGAACAAAACTTCTTTACTTGTAGATCAGTTATATAGAAGTCACC
AAAGCTGGCTTCACCAATGG

Downstream 100 bases:

>100_bases
ATGGCTATGGACAAAAGCAAACATCACCAACTGGTTGAAGAAGCCGCGTATTGGATCGTTCAACTGAGTTCGGATGATGA
ACGCTCGCGAAAAACCGCCA

Product: RNA polymerase sigma factor (iron regulated)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MRQKLGNTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLSQMKYMLDAVASPEDQ
MQIIQAINQLCKALEGVSEKAQQAFILHYLEGYTHKEIAERLNVSTKMIQKYLASCLIQCYQNRQDMDACI

Sequences:

>Translated_151_residues
MRQKLGNTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLSQMKYMLDAVASPEDQ
MQIIQAINQLCKALEGVSEKAQQAFILHYLEGYTHKEIAERLNVSTKMIQKYLASCLIQCYQNRQDMDACI
>Mature_151_residues
MRQKLGNTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLSQMKYMLDAVASPEDQ
MQIIQAINQLCKALEGVSEKAQQAFILHYLEGYTHKEIAERLNVSTKMIQKYLASCLIQCYQNRQDMDACI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=140, Percent_Identity=34.2857142857143, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 17404; Mature: 17404

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQKLGNTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDGLSQMKYMLDAVASPEDQMQIIQAINQLCKALEGVSEKAQQAFILHYLEGYTHKEIAE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RLNVSTKMIQKYLASCLIQCYQNRQDMDACI
HHCHHHHHHHHHHHHHHHHHHHCHHHHHHCC
>Mature Secondary Structure
MRQKLGNTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDGLSQMKYMLDAVASPEDQMQIIQAINQLCKALEGVSEKAQQAFILHYLEGYTHKEIAE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RLNVSTKMIQKYLASCLIQCYQNRQDMDACI
HHCHHHHHHHHHHHHHHHHHHHCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]