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The map label for this gene is qseB [H]

Identifier: 50084599

GI number: 50084599

Start: 1417204

End: 1417884

Strand: Reverse

Name: qseB [H]

Synonym: ACIAD1422

Alternate gene names: 50084599

Gene position: 1417884-1417204 (Counterclockwise)

Preceding gene: 50084600

Following gene: 50084598

Centisome position: 39.4

GC content: 37.89

Gene sequence:

>681_bases
ATGATTAAAATTTTATACATTGAAGATGATGTCATGATTGGCAAGACCACTTATCAGTTATTGCGCCATGAAAAATTTGA
AGTCGACTGGGCTAAAACCGGACTTGAAGCACTGGATTTTCTATTTAGACAAACCTATCACCTCGTTTTACTTGATCTTG
GACTGCCCGAGCTTGAAGGCTTGGATGTCCTCAAACACATCCGAAAAAAAATCGAGCTCAATAAGATTGCAGTTATTATT
ATCAGTGCGCGAGATCAAAGCCGCGACAAGATTCAAGGGCTAAAACTTGGTGCAGACGATTATATTGTCAAACCGTATGA
TTTTGACGAATTGGTCGCGCGTATCGAATCTGTGTTAAGGCGTGGTAATTACGCCTCACTCAATGAATTGAACTTTAATG
TAGGACAAGTTCAGCTCTTTCCAAATACGCATCGTATATTGAAAGATGGGCAGCCGATTAACCTGTCTACAAAAGAATGG
TCAATTTTAGAACCAATGATGATGTATCCCAACCAGATTTTCTCCAAACAGATGCTTGAAGAAAAACTGTACGATTGTGA
TGATGAGATCAATAGCAATACCATTGAAGTACATATTCATAATTTACGACAAAAGCTTGGAAAAGATTTTATCCGAAATG
TACGAGGCTTAGGCTATTGTGTTGAAACTCAAGAAAAATAA

Upstream 100 bases:

>100_bases
GATAATTTATTTCCAACGGTTTTGAGTTTATTGGACATACAGACCAAGGCACTTAACCCGCAATTTGATCTGCTGGCTCA
ATGTAAAGGTAACTTATAAC

Downstream 100 bases:

>100_bases
GTTCATTCGTTTCAGACATGACTTAAAACGGATTAAGCAATTTTATCAAGAGAAACCTCTAAGTCTGCGCATGTCTTGGA
GCATTTCAATATTTAGTATT

Product: 2-component regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MIKILYIEDDVMIGKTTYQLLRHEKFEVDWAKTGLEALDFLFRQTYHLVLLDLGLPELEGLDVLKHIRKKIELNKIAVII
ISARDQSRDKIQGLKLGADDYIVKPYDFDELVARIESVLRRGNYASLNELNFNVGQVQLFPNTHRILKDGQPINLSTKEW
SILEPMMMYPNQIFSKQMLEEKLYDCDDEINSNTIEVHIHNLRQKLGKDFIRNVRGLGYCVETQEK

Sequences:

>Translated_226_residues
MIKILYIEDDVMIGKTTYQLLRHEKFEVDWAKTGLEALDFLFRQTYHLVLLDLGLPELEGLDVLKHIRKKIELNKIAVII
ISARDQSRDKIQGLKLGADDYIVKPYDFDELVARIESVLRRGNYASLNELNFNVGQVQLFPNTHRILKDGQPINLSTKEW
SILEPMMMYPNQIFSKQMLEEKLYDCDDEINSNTIEVHIHNLRQKLGKDFIRNVRGLGYCVETQEK
>Mature_226_residues
MIKILYIEDDVMIGKTTYQLLRHEKFEVDWAKTGLEALDFLFRQTYHLVLLDLGLPELEGLDVLKHIRKKIELNKIAVII
ISARDQSRDKIQGLKLGADDYIVKPYDFDELVARIESVLRRGNYASLNELNFNVGQVQLFPNTHRILKDGQPINLSTKEW
SILEPMMMYPNQIFSKQMLEEKLYDCDDEINSNTIEVHIHNLRQKLGKDFIRNVRGLGYCVETQEK

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=220, Percent_Identity=41.3636363636364, Blast_Score=182, Evalue=1e-47,
Organism=Escherichia coli, GI1790552, Length=225, Percent_Identity=39.5555555555556, Blast_Score=151, Evalue=3e-38,
Organism=Escherichia coli, GI1786784, Length=229, Percent_Identity=31.0043668122271, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI1786599, Length=226, Percent_Identity=30.9734513274336, Blast_Score=124, Evalue=3e-30,
Organism=Escherichia coli, GI1788394, Length=224, Percent_Identity=32.1428571428571, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1789809, Length=228, Percent_Identity=29.8245614035088, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=29.1479820627803, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=28.125, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI2367329, Length=232, Percent_Identity=32.7586206896552, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1787229, Length=225, Percent_Identity=27.5555555555556, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1787375, Length=227, Percent_Identity=27.3127753303965, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=26.3392857142857, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=26.9565217391304, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790437, Length=119, Percent_Identity=36.9747899159664, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=24.1525423728814, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26424; Mature: 26424

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKILYIEDDVMIGKTTYQLLRHEKFEVDWAKTGLEALDFLFRQTYHLVLLDLGLPELEG
CEEEEEEECCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCH
LDVLKHIRKKIELNKIAVIIISARDQSRDKIQGLKLGADDYIVKPYDFDELVARIESVLR
HHHHHHHHHHHCCCEEEEEEEECCCCCHHHHCCEEECCCCCEECCCCHHHHHHHHHHHHH
RGNYASLNELNFNVGQVQLFPNTHRILKDGQPINLSTKEWSILEPMMMYPNQIFSKQMLE
CCCCCCHHHCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
EKLYDCDDEINSNTIEVHIHNLRQKLGKDFIRNVRGLGYCVETQEK
HHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCEEEEECCCC
>Mature Secondary Structure
MIKILYIEDDVMIGKTTYQLLRHEKFEVDWAKTGLEALDFLFRQTYHLVLLDLGLPELEG
CEEEEEEECCEEECHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCH
LDVLKHIRKKIELNKIAVIIISARDQSRDKIQGLKLGADDYIVKPYDFDELVARIESVLR
HHHHHHHHHHHCCCEEEEEEEECCCCCHHHHCCEEECCCCCEECCCCHHHHHHHHHHHHH
RGNYASLNELNFNVGQVQLFPNTHRILKDGQPINLSTKEWSILEPMMMYPNQIFSKQMLE
CCCCCCHHHCCCCCCEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
EKLYDCDDEINSNTIEVHIHNLRQKLGKDFIRNVRGLGYCVETQEK
HHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]