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The map label for this gene is ybgF [C]

Identifier: 50084561

GI number: 50084561

Start: 1378916

End: 1379743

Strand: Reverse

Name: ybgF [C]

Synonym: ACIAD1383

Alternate gene names: 50084561

Gene position: 1379743-1378916 (Counterclockwise)

Preceding gene: 50084562

Following gene: 50084548

Centisome position: 38.34

GC content: 37.56

Gene sequence:

>828_bases
ATGCTAAAAAAGCATTTGCCCTTCGCAACAATTTTACTTTTGGTTAGTTTTCAAAGTTACGCAAATGTTCCAATTGAATC
CCGTGGCCTCAGTCAAAATACAGGAACATCTTTACCTGGTACATCGCCTGCTGCCCCACTAAATATTAATTGGGAAATTA
TGCAAAAGAATCAGCAACTTGAAAATGAAATTCGTAATCTTCGTGGCAAGCTGGAAGAGCAAGACAATGAAATTGACAAA
TTAAAAAACGATTTACAAAATCGATATACAGATCTTGATCAACGTTTAGAGATTTTAAATCAAAAGCTAGATCCAGACAC
CAGCCAAACTCAGGATAGCACCCAACAAGATCAAGCAAATCCTACTTCGGCTCAAAATACCGTAACATCAACCACAAGCT
CTACACCAGCTCAAGACAATTCACAGCCAGCTTCAACAGATAATGTGACACATCAGGATCCAGTCGAACTTGAAAAAGCA
GCGTACACAGTTGCATTAGATGCTTATAAACAAGGTGGTGCGAAAAAAGCAATTGCACCGATGCAAAATTTTATTAAAAA
TCATCCCAACAGCATTTACACTGGAAATGCTTATTTCTGGTTAGCTGAATTTAACTTAGCCACCGATCCAGTGAATTACA
CAGAAGCAAAGAAGAACTATGATATCGTTGTTAAGCGCTACCCTACCTCAAGTAAAGCTCCCCGATCTTTATACCAGCTA
TATAGCATTGCCAAAGATGTAGAACACAATTCCGCAGTTGCCAATCAGTTAAAAGCGAAATTATTGAAAACCTATCCTCA
ATCTGAAGAAGTAAAATACTTTAAATAA

Upstream 100 bases:

>100_bases
CTCTAATGCTTTAATGGCAACATTAGATGATTAAAACTCAGTGATACTTCAAACTGAGTTAATTAAAGCATCTTTCTCGA
TTTTTAAATGGAATTCTCTT

Downstream 100 bases:

>100_bases
ATTTTAATCTACAAAAAAAGACACCTAAATGGTGTCTTTTTTTATTAATTATGAGGTATTTAACGCACAATTCCACGTTG
TGACTGTTCAACAGAATCAA

Product: signal peptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MLKKHLPFATILLLVSFQSYANVPIESRGLSQNTGTSLPGTSPAAPLNINWEIMQKNQQLENEIRNLRGKLEEQDNEIDK
LKNDLQNRYTDLDQRLEILNQKLDPDTSQTQDSTQQDQANPTSAQNTVTSTTSSTPAQDNSQPASTDNVTHQDPVELEKA
AYTVALDAYKQGGAKKAIAPMQNFIKNHPNSIYTGNAYFWLAEFNLATDPVNYTEAKKNYDIVVKRYPTSSKAPRSLYQL
YSIAKDVEHNSAVANQLKAKLLKTYPQSEEVKYFK

Sequences:

>Translated_275_residues
MLKKHLPFATILLLVSFQSYANVPIESRGLSQNTGTSLPGTSPAAPLNINWEIMQKNQQLENEIRNLRGKLEEQDNEIDK
LKNDLQNRYTDLDQRLEILNQKLDPDTSQTQDSTQQDQANPTSAQNTVTSTTSSTPAQDNSQPASTDNVTHQDPVELEKA
AYTVALDAYKQGGAKKAIAPMQNFIKNHPNSIYTGNAYFWLAEFNLATDPVNYTEAKKNYDIVVKRYPTSSKAPRSLYQL
YSIAKDVEHNSAVANQLKAKLLKTYPQSEEVKYFK
>Mature_275_residues
MLKKHLPFATILLLVSFQSYANVPIESRGLSQNTGTSLPGTSPAAPLNINWEIMQKNQQLENEIRNLRGKLEEQDNEIDK
LKNDLQNRYTDLDQRLEILNQKLDPDTSQTQDSTQQDQANPTSAQNTVTSTTSSTPAQDNSQPASTDNVTHQDPVELEKA
AYTVALDAYKQGGAKKAIAPMQNFIKNHPNSIYTGNAYFWLAEFNLATDPVNYTEAKKNYDIVVKRYPTSSKAPRSLYQL
YSIAKDVEHNSAVANQLKAKLLKTYPQSEEVKYFK

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30916; Mature: 30916

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKHLPFATILLLVSFQSYANVPIESRGLSQNTGTSLPGTSPAAPLNINWEIMQKNQQL
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ENEIRNLRGKLEEQDNEIDKLKNDLQNRYTDLDQRLEILNQKLDPDTSQTQDSTQQDQAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC
PTSAQNTVTSTTSSTPAQDNSQPASTDNVTHQDPVELEKAAYTVALDAYKQGGAKKAIAP
CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
MQNFIKNHPNSIYTGNAYFWLAEFNLATDPVNYTEAKKNYDIVVKRYPTSSKAPRSLYQL
HHHHHHCCCCCEEECCEEEEEEECCCCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHH
YSIAKDVEHNSAVANQLKAKLLKTYPQSEEVKYFK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLKKHLPFATILLLVSFQSYANVPIESRGLSQNTGTSLPGTSPAAPLNINWEIMQKNQQL
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
ENEIRNLRGKLEEQDNEIDKLKNDLQNRYTDLDQRLEILNQKLDPDTSQTQDSTQQDQAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCC
PTSAQNTVTSTTSSTPAQDNSQPASTDNVTHQDPVELEKAAYTVALDAYKQGGAKKAIAP
CCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
MQNFIKNHPNSIYTGNAYFWLAEFNLATDPVNYTEAKKNYDIVVKRYPTSSKAPRSLYQL
HHHHHHCCCCCEEECCEEEEEEECCCCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHH
YSIAKDVEHNSAVANQLKAKLLKTYPQSEEVKYFK
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]