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The map label for this gene is cspG [H]

Identifier: 50084495

GI number: 50084495

Start: 1312963

End: 1313175

Strand: Direct

Name: cspG [H]

Synonym: ACIAD1313

Alternate gene names: 50084495

Gene position: 1312963-1313175 (Clockwise)

Preceding gene: 50084488

Following gene: 50084496

Centisome position: 36.49

GC content: 44.13

Gene sequence:

>213_bases
ATGACAGCTCGTGAACAAGGTGTAGTAAAGTGGTTTAACGATACCAAGGGCTTTGGCTTTATTCAACGTAACGGTGGTGA
TGACGTATTTGTTCATTTCCGTGCAATCATGGGTGACGGTCACCGTTCACTTCGTGACGGTCAACGCGTTGAATTCAGTG
TTGTTCAAGGTCAAAAAGGTTTTCAGGCTGAAAACGTTCAGCCTTTAGACTAA

Upstream 100 bases:

>100_bases
ATGATTACAAGCTTTGAAATAACAAAGAATTTCGAATCTTGTTTGCTATGCTGTTTGCAACACCGGAAGGTCCTTTAATT
TAACTTCTGAGGATTGACTT

Downstream 100 bases:

>100_bases
TCAATCTTTTAGATTGAGAAACGCTCCAATTTTTTAAATTGGAGCGTTTTTGTTTTATACTATAGTCCACATCTGAGTGG
TTAACGTTAGAGCAACAGTT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MTAREQGVVKWFNDTKGFGFIQRNGGDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQKGFQAENVQPLD

Sequences:

>Translated_70_residues
MTAREQGVVKWFNDTKGFGFIQRNGGDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQKGFQAENVQPLD
>Mature_69_residues
TAREQGVVKWFNDTKGFGFIQRNGGDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQKGFQAENVQPLD

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=52.8571428571429, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=52.9411764705882, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=50.7462686567164, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1788126, Length=68, Percent_Identity=54.4117647058823, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=52.8571428571429, Blast_Score=72, Evalue=6e-15,
Organism=Escherichia coli, GI1787839, Length=71, Percent_Identity=52.112676056338, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=47.1428571428571, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7913; Mature: 7782

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAREQGVVKWFNDTKGFGFIQRNGGDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQKG
CCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCC
FQAENVQPLD
CCCCCCCCCC
>Mature Secondary Structure 
TAREQGVVKWFNDTKGFGFIQRNGGDDVFVHFRAIMGDGHRSLRDGQRVEFSVVQGQKG
CCCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCC
FQAENVQPLD
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]