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The map label for this gene is fecI [H]

Identifier: 50084352

GI number: 50084352

Start: 1157618

End: 1158133

Strand: Direct

Name: fecI [H]

Synonym: ACIAD1161

Alternate gene names: 50084352

Gene position: 1157618-1158133 (Clockwise)

Preceding gene: 50084351

Following gene: 50084353

Centisome position: 32.17

GC content: 37.4

Gene sequence:

>516_bases
ATGACGGCAAATCAACAAATTATCACACACTACATAGCAGAGTTATATAAAGCTCACTATGGTTGGTTATATGGCTGGCT
GTATAAAAAATTGGGTTCGGCTGAAAATGCAGAAGATGTATTGCAAGATACATTTACTAAATTGATTCGTAGTCAGGGAT
TACTTGATATTCAGCAACCCAAGGCTTATTTGACTACAACGGCAAAACGGATTTTGATTGATCGGGCGCGCCATCAAAAG
ATCGAACAATCGTATCTGGAATATTTGGCTCAGCAAAATTTAACTTATGATATCAGCCCAGAGCAAACTGTATTGGCGAT
AGATATACTTAATCAATTGGCTTGGGTATTGGATGGTTTAGCTGAACGACAACAGCTTGCATTTCTGATGCATTATATCG
ATGGTTTGAGTTTAGTGGATATCGCAACACGCTTAAAAGTCACCAGCAGAACGATCCACTACGATTTAGTTAAAACATTA
AGTCATTGTTATTGTGTGCTAAAATCAGACTCATAA

Upstream 100 bases:

>100_bases
GAATCAAGATGAATATTGGGAAAATAATTTAAATAAAATTGATAATAGTTCTCATTACTGATAAATTAACCGCATTTATG
ATGGCGTGGCGTTAATTCTC

Downstream 100 bases:

>100_bases
ATTTATCATTATAATAGCCAATTTCATGCCAAATCCTGATCAAAAAATTATTATAGAGGAAGCAGCTAAATGGCTGGTAA
TATTAAGTTCAGGTGATTAT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MTANQQIITHYIAELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILIDRARHQK
IEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHYIDGLSLVDIATRLKVTSRTIHYDLVKTL
SHCYCVLKSDS

Sequences:

>Translated_171_residues
MTANQQIITHYIAELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILIDRARHQK
IEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHYIDGLSLVDIATRLKVTSRTIHYDLVKTL
SHCYCVLKSDS
>Mature_170_residues
TANQQIITHYIAELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQPKAYLTTTAKRILIDRARHQKI
EQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGLAERQQLAFLMHYIDGLSLVDIATRLKVTSRTIHYDLVKTLS
HCYCVLKSDS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=149, Percent_Identity=38.255033557047, Blast_Score=112, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19766; Mature: 19635

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANQQIITHYIAELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
KAYLTTTAKRILIDRARHQKIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHH
AERQQLAFLMHYIDGLSLVDIATRLKVTSRTIHYDLVKTLSHCYCVLKSDS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TANQQIITHYIAELYKAHYGWLYGWLYKKLGSAENAEDVLQDTFTKLIRSQGLLDIQQP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
KAYLTTTAKRILIDRARHQKIEQSYLEYLAQQNLTYDISPEQTVLAIDILNQLAWVLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHH
AERQQLAFLMHYIDGLSLVDIATRLKVTSRTIHYDLVKTLSHCYCVLKSDS
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]