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The map label for this gene is srpC [H]

Identifier: 50084351

GI number: 50084351

Start: 1156109

End: 1157578

Strand: Direct

Name: srpC [H]

Synonym: ACIAD1160

Alternate gene names: 50084351

Gene position: 1156109-1157578 (Clockwise)

Preceding gene: 50084350

Following gene: 50084352

Centisome position: 32.13

GC content: 38.84

Gene sequence:

>1470_bases
GTGATTAGTTTGGATTTATCAAAATATCTGGCAGTTTGGGGCTGTGTTGTACTATTTACTGGATGTAATTCAAATATGCT
GATGTATCCCCCCATTTATCAACAACCTATAATCAAAGCAGATCCACAATATAAATATGCTTCTTCATTCAAATGGGTGC
AAACACAGAGTTTGATCAGTCAAAGCTCCCAGTGGTGGGAACTTTATCAAGATGACAAGCTTAATTTTTTGATTCAACAA
CTTAATGCAGAAAACCTAACCTTAAAACAGGCCGAAGCACGTTATCGTCATGCCAGTGCGCTATTCAATGTACAACGTAC
AGCACGTTTGCCTACACTCGGCGTAGAAGCAGCGGCAAATCGTAATGGTCGTAAAAATAATGAATCAAATCATCAATCCA
GTGCTCAATTTAGTACGGGATTACAAGCCAGTTGGATACCTGATTTATGGGGTAGGGTTACTAAAGCAATACAAGGACAA
CAAGCCAGTGTAGATGCTTCGCAGGCAGATTTAGCCGCGATTAAACTTAACCAACAACTTATGGCCGCACAAAGTTATTG
GAATATTCGACTACTGGATTTACAACTTAATGTGCTAAAACAAACTAAGCAAAGTTATGTGCGTTCGCTACAGATTTTAA
AAAATCAATATCAGGCGGGGATGATTGCTCGTGCAGATGTTATTCAAGCCGAAACTCAACTCAAACAAGTTGAAATCCAG
CATATCGAACAACAACGTGAGCGAAATTTGCAAGAGAATATTCTTGCTGTATTACTTGGTCAAACAGTGACTCAGTTTCA
ATTAAGTAAACAAACAGCTCAATTTCATCTGCCTGAAATTCCTGTTCAGCTTCCAAGTCATTTATTAATTCAACGACCTG
ATGTAATTCGTGCTGAACGAGAACTTGCAGCAACTCATGCACAACTTGGTCTGGCACAAACGGCATGGCTACCTGATGTC
AGTATTGGCGTAAATGGAAGTTTAAACAACAATATATTTTTAGAGCTTTTTCAGTCACCCAACTATTTATGGTCAATCGG
TTTAGGCACCGTAGCGACGGTATTTGATGGTGGAAAACGTAAGGCTGAAATAAATCAGGCGCAAGCGAACTATGAAGAAA
AATTGGCGACATATAAACAAGCCATACTCACTGGTTGGAAAGAGGTGGAGGATGGCTTAATGCAATCGACGAGTTTGAAG
CAACAAGCTACTGAACAGGCTCAATTGTTAAATCTGGCCAATGAAAATGAACGTGTAGTGACGCAACGCTATAACGCTGG
ACTAATCAGTTATTTAGAAGTAGTAACTGCTCAGAACTTACGTTTACAGGCAGAACAAGATCGATTGAAGTTACAACAAC
GTCAGATGATCAATTCAATGCAATTAATAGCAGCCTTAGGCACAGGATGGAATCAAGATGAATATTGGGAAAATAATTTA
AATAAAATTGATAATAGTTCTCATTACTGA

Upstream 100 bases:

>100_bases
ACCTGTGATGTATCTCGTTTTAGAAAAATTGGCTCAAATATTTAAAAAATTCAAGATGAGCAATGCCATCGGTTATAGAA
ATAGATAGGAAAATATAAAA

Downstream 100 bases:

>100_bases
TAAATTAACCGCATTTATGATGGCGTGGCGTTAATTCTCATGACGGCAAATCAACAAATTATCACACACTACATAGCAGA
GTTATATAAAGCTCACTATG

Product: membrane channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MISLDLSKYLAVWGCVVLFTGCNSNMLMYPPIYQQPIIKADPQYKYASSFKWVQTQSLISQSSQWWELYQDDKLNFLIQQ
LNAENLTLKQAEARYRHASALFNVQRTARLPTLGVEAAANRNGRKNNESNHQSSAQFSTGLQASWIPDLWGRVTKAIQGQ
QASVDASQADLAAIKLNQQLMAAQSYWNIRLLDLQLNVLKQTKQSYVRSLQILKNQYQAGMIARADVIQAETQLKQVEIQ
HIEQQRERNLQENILAVLLGQTVTQFQLSKQTAQFHLPEIPVQLPSHLLIQRPDVIRAERELAATHAQLGLAQTAWLPDV
SIGVNGSLNNNIFLELFQSPNYLWSIGLGTVATVFDGGKRKAEINQAQANYEEKLATYKQAILTGWKEVEDGLMQSTSLK
QQATEQAQLLNLANENERVVTQRYNAGLISYLEVVTAQNLRLQAEQDRLKLQQRQMINSMQLIAALGTGWNQDEYWENNL
NKIDNSSHY

Sequences:

>Translated_489_residues
MISLDLSKYLAVWGCVVLFTGCNSNMLMYPPIYQQPIIKADPQYKYASSFKWVQTQSLISQSSQWWELYQDDKLNFLIQQ
LNAENLTLKQAEARYRHASALFNVQRTARLPTLGVEAAANRNGRKNNESNHQSSAQFSTGLQASWIPDLWGRVTKAIQGQ
QASVDASQADLAAIKLNQQLMAAQSYWNIRLLDLQLNVLKQTKQSYVRSLQILKNQYQAGMIARADVIQAETQLKQVEIQ
HIEQQRERNLQENILAVLLGQTVTQFQLSKQTAQFHLPEIPVQLPSHLLIQRPDVIRAERELAATHAQLGLAQTAWLPDV
SIGVNGSLNNNIFLELFQSPNYLWSIGLGTVATVFDGGKRKAEINQAQANYEEKLATYKQAILTGWKEVEDGLMQSTSLK
QQATEQAQLLNLANENERVVTQRYNAGLISYLEVVTAQNLRLQAEQDRLKLQQRQMINSMQLIAALGTGWNQDEYWENNL
NKIDNSSHY
>Mature_489_residues
MISLDLSKYLAVWGCVVLFTGCNSNMLMYPPIYQQPIIKADPQYKYASSFKWVQTQSLISQSSQWWELYQDDKLNFLIQQ
LNAENLTLKQAEARYRHASALFNVQRTARLPTLGVEAAANRNGRKNNESNHQSSAQFSTGLQASWIPDLWGRVTKAIQGQ
QASVDASQADLAAIKLNQQLMAAQSYWNIRLLDLQLNVLKQTKQSYVRSLQILKNQYQAGMIARADVIQAETQLKQVEIQ
HIEQQRERNLQENILAVLLGQTVTQFQLSKQTAQFHLPEIPVQLPSHLLIQRPDVIRAERELAATHAQLGLAQTAWLPDV
SIGVNGSLNNNIFLELFQSPNYLWSIGLGTVATVFDGGKRKAEINQAQANYEEKLATYKQAILTGWKEVEDGLMQSTSLK
QQATEQAQLLNLANENERVVTQRYNAGLISYLEVVTAQNLRLQAEQDRLKLQQRQMINSMQLIAALGTGWNQDEYWENNL
NKIDNSSHY

Specific function: The outer membrane component of an organic solvent efflux pump. Involved in export of a number of low log POW compounds including hexane (log POW 3.5), toluene (log POW 2.5) and dimethylphthalate (log POW 2.3). The solvent resistance phenotype has been po

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=462, Percent_Identity=26.8398268398268, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI2367348, Length=491, Percent_Identity=24.2362525458248, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 55501; Mature: 55501

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLDLSKYLAVWGCVVLFTGCNSNMLMYPPIYQQPIIKADPQYKYASSFKWVQTQSLIS
CCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHH
QSSQWWELYQDDKLNFLIQQLNAENLTLKQAEARYRHASALFNVQRTARLPTLGVEAAAN
CCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCC
RNGRKNNESNHQSSAQFSTGLQASWIPDLWGRVTKAIQGQQASVDASQADLAAIKLNQQL
CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
MAAQSYWNIRLLDLQLNVLKQTKQSYVRSLQILKNQYQAGMIARADVIQAETQLKQVEIQ
HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
HIEQQRERNLQENILAVLLGQTVTQFQLSKQTAQFHLPEIPVQLPSHLLIQRPDVIRAER
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHCCCHHHHHHH
ELAATHAQLGLAQTAWLPDVSIGVNGSLNNNIFLELFQSPNYLWSIGLGTVATVFDGGKR
HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHCCCCC
KAEINQAQANYEEKLATYKQAILTGWKEVEDGLMQSTSLKQQATEQAQLLNLANENERVV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
TQRYNAGLISYLEVVTAQNLRLQAEQDRLKLQQRQMINSMQLIAALGTGWNQDEYWENNL
HHHCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
NKIDNSSHY
HHCCCCCCC
>Mature Secondary Structure
MISLDLSKYLAVWGCVVLFTGCNSNMLMYPPIYQQPIIKADPQYKYASSFKWVQTQSLIS
CCCCCHHHHHHHHHHHHHEECCCCCEEECCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHH
QSSQWWELYQDDKLNFLIQQLNAENLTLKQAEARYRHASALFNVQRTARLPTLGVEAAAN
CCHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCC
RNGRKNNESNHQSSAQFSTGLQASWIPDLWGRVTKAIQGQQASVDASQADLAAIKLNQQL
CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
MAAQSYWNIRLLDLQLNVLKQTKQSYVRSLQILKNQYQAGMIARADVIQAETQLKQVEIQ
HHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
HIEQQRERNLQENILAVLLGQTVTQFQLSKQTAQFHLPEIPVQLPSHLLIQRPDVIRAER
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHCCCHHHHHHH
ELAATHAQLGLAQTAWLPDVSIGVNGSLNNNIFLELFQSPNYLWSIGLGTVATVFDGGKR
HHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHCCCCC
KAEINQAQANYEEKLATYKQAILTGWKEVEDGLMQSTSLKQQATEQAQLLNLANENERVV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
TQRYNAGLISYLEVVTAQNLRLQAEQDRLKLQQRQMINSMQLIAALGTGWNQDEYWENNL
HHHCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
NKIDNSSHY
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9417051; 9852029 [H]