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The map label for this gene is sodM

Identifier: 50084269

GI number: 50084269

Start: 1065722

End: 1066408

Strand: Reverse

Name: sodM

Synonym: ACIAD1070

Alternate gene names: 50084269

Gene position: 1066408-1065722 (Counterclockwise)

Preceding gene: 50084270

Following gene: 50084267

Centisome position: 29.63

GC content: 40.03

Gene sequence:

>687_bases
ATGACACGTTCACTTAAAACAACACTGATTTTACTTGCTAGCTCAGTGATCAGCATGTCAGCACTGGCGGAGTTTAAACA
AGCACCTTTACCGTATGCGACGAATGCATTACAACCTGCAATCGATCAACAAACCATGGAAATCCACTATGGCAAACATC
ATAAGGCTTATGTAGATAACCTAAATGCACAAATTAAAACTTATCCAGAACTTGATAAAACCGATTTAATTCAACTTCAA
AAGCAAATCTCTAAATACAACACAGCAGTACGTAATAATGGTGGGGGCCACTTTAACCATACTTTCTTCTGGGAAAGCTT
GGCGGCAACCAACAAAACAGGTCAGCCTAGTCCTGCCCTCGTAAAACAAATTACTCAAGATTTTGGTTCTCTCGATGCAT
TCAAACAAAAATTTAATGAAGCCGCATCTGGACGTTTTGGATCGGGCTGGGCATGGTTGATTGTTACTCCAAATGGCAAA
CTGGCTGTAACATCTACTCCAAATCAAGACAATCCTTTAATGGATCTGAGTGAAACCAAAGGCACACCTTTACTGGGGCT
TGATGTTTGGGAACATGCCTATTACCTGAAATATCAAAACCGTCGCGCCGATTACATCAAAGCATTTTGGAGCGTAGTAA
ACTGGAATAAAGTTAATGAGCGTTACAACGAAGCCATTAAAAAATAA

Upstream 100 bases:

>100_bases
AATGCTTTATTATATAAATGTAACCAATAATCATTCTCTCTCACAAACCAGCTAATATGATAAAGAAGTAAAAATTCTTA
ATACTCAGGGATAATAGTTA

Downstream 100 bases:

>100_bases
TTTTCAGCAAAAAAAAGAGCTTCTGAATTAGAAGCTCTTTTTATATCTTTTTTATTTATACATCTTTACGACGCATATGC
GGAAATAACAGTACATCACG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MTRSLKTTLILLASSVISMSALAEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKTYPELDKTDLIQLQ
KQISKYNTAVRNNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIVTPNGK
LAVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNEAIKK

Sequences:

>Translated_228_residues
MTRSLKTTLILLASSVISMSALAEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKTYPELDKTDLIQLQ
KQISKYNTAVRNNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIVTPNGK
LAVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNEAIKK
>Mature_227_residues
TRSLKTTLILLASSVISMSALAEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKTYPELDKTDLIQLQK
QISKYNTAVRNNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIVTPNGKL
AVTSTPNQDNPLMDLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNEAIKK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Periplasm (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=224, Percent_Identity=44.1964285714286, Blast_Score=179, Evalue=2e-45,
Organism=Homo sapiens, GI67782305, Length=224, Percent_Identity=44.1964285714286, Blast_Score=179, Evalue=2e-45,
Organism=Homo sapiens, GI67782309, Length=224, Percent_Identity=36.6071428571429, Blast_Score=135, Evalue=2e-32,
Organism=Escherichia coli, GI1790342, Length=200, Percent_Identity=52.5, Blast_Score=204, Evalue=3e-54,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=45.360824742268, Blast_Score=167, Evalue=4e-43,
Organism=Caenorhabditis elegans, GI17506561, Length=218, Percent_Identity=39.9082568807339, Blast_Score=160, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI17569479, Length=227, Percent_Identity=36.5638766519824, Blast_Score=152, Evalue=9e-38,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=41.747572815534, Blast_Score=146, Evalue=2e-36,
Organism=Drosophila melanogaster, GI17136812, Length=219, Percent_Identity=42.9223744292237, Blast_Score=162, Evalue=2e-40,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODM_ACIAD (Q59094)

Other databases:

- EMBL:   Z46863
- EMBL:   CR543861
- PIR:   JC6320
- RefSeq:   YP_045779.1
- ProteinModelPortal:   Q59094
- SMR:   Q59094
- STRING:   Q59094
- GeneID:   2880832
- GenomeReviews:   CR543861_GR
- KEGG:   aci:ACIAD1070
- NMPDR:   fig|62977.3.peg.1218
- eggNOG:   COG0605
- HOGENOM:   HBG507761
- OMA:   TIATIQG
- PhylomeDB:   Q59094
- BioCyc:   ASP62977:ACIAD1070-MONOMER
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 25741; Mature: 25610

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSLKTTLILLASSVISMSALAEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDN
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHEEEECCCCHHHHHHC
LNAQIKTYPELDKTDLIQLQKQISKYNTAVRNNGGGHFNHTFFWESLAATNKTGQPSPAL
CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHH
VKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIVTPNGKLAVTSTPNQDNPLMDLSETK
HHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCC
GTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNEAIKK
CCCEEEHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TRSLKTTLILLASSVISMSALAEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHEEEECCCCHHHHHHC
LNAQIKTYPELDKTDLIQLQKQISKYNTAVRNNGGGHFNHTFFWESLAATNKTGQPSPAL
CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCHHH
VKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIVTPNGKLAVTSTPNQDNPLMDLSETK
HHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCC
GTPLLGLDVWEHAYYLKYQNRRADYIKAFWSVVNWNKVNERYNEAIKK
CCCEEEHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9074511