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The map label for this gene is ygaU [H]

Identifier: 50084084

GI number: 50084084

Start: 856374

End: 856850

Strand: Direct

Name: ygaU [H]

Synonym: ACIAD0873

Alternate gene names: 50084084

Gene position: 856374-856850 (Clockwise)

Preceding gene: 50084083

Following gene: 50084087

Centisome position: 23.8

GC content: 36.9

Gene sequence:

>477_bases
ATGGGTCTTTTTGATTTTGTAAAAGGTATCGGTAAAAAAAATCAGGCAAAAGTTGAACAAACAACGACACCAGCATCAAC
TGAGCCAACAGCACAAGAAGTCGCAAATCAGCTGCTTGCGCATGTTCAAAGCTTGGGGTTGCCGATAGATGGCCTAGTGG
TCAATTATAACAGTACAACAGACTTGGCGACGATTCAGGGTAAAGTTAAAAGTCAGGCAGATAAAGAGAAAATTATCTTG
GCTGTCGGGAATATCGATCATGTTGCGAAAGTAGATGACCAGATGACGGTTGAAACACCTGAACCAGAAAGTAAATTTTA
TACTGTTAAAGCAGGTGATAATTTGTCTAAAATTTCAAAAGAATATTATGGTGATCCAAATCATTACAATAAAATTTTTG
AAGCAAATAAACCTCTTCTTAAAGATGCTGATGATATTTATCCAGGTCAGGTCTTGCGTATTCCACAGTATTTTTAA

Upstream 100 bases:

>100_bases
ATGATGACAATATACACGTAATAACTTGCATTATTTGAGTATAACTTTAAGAGTTTTATACTTTTATTCATGACTACAAT
AATCATGTCAGGAGAAAATA

Downstream 100 bases:

>100_bases
AATTAATCAAATTTAGCTAAGCCTAATCCCTCTAATCGAATTTTGATGGTTTCTTGAGAAACACTAAAATATTTGGCTAG
AGGGATTATAATTTTGAAGT

Product: LysM domain/BON superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MGLFDFVKGIGKKNQAKVEQTTTPASTEPTAQEVANQLLAHVQSLGLPIDGLVVNYNSTTDLATIQGKVKSQADKEKIIL
AVGNIDHVAKVDDQMTVETPEPESKFYTVKAGDNLSKISKEYYGDPNHYNKIFEANKPLLKDADDIYPGQVLRIPQYF

Sequences:

>Translated_158_residues
MGLFDFVKGIGKKNQAKVEQTTTPASTEPTAQEVANQLLAHVQSLGLPIDGLVVNYNSTTDLATIQGKVKSQADKEKIIL
AVGNIDHVAKVDDQMTVETPEPESKFYTVKAGDNLSKISKEYYGDPNHYNKIFEANKPLLKDADDIYPGQVLRIPQYF
>Mature_157_residues
GLFDFVKGIGKKNQAKVEQTTTPASTEPTAQEVANQLLAHVQSLGLPIDGLVVNYNSTTDLATIQGKVKSQADKEKIILA
VGNIDHVAKVDDQMTVETPEPESKFYTVKAGDNLSKISKEYYGDPNHYNKIFEANKPLLKDADDIYPGQVLRIPQYF

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=156, Percent_Identity=48.7179487179487, Blast_Score=135, Evalue=1e-33,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 17426; Mature: 17295

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFDFVKGIGKKNQAKVEQTTTPASTEPTAQEVANQLLAHVQSLGLPIDGLVVNYNSTT
CCHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
DLATIQGKVKSQADKEKIILAVGNIDHVAKVDDQMTVETPEPESKFYTVKAGDNLSKISK
CHHHHHHHHHCCCCCCEEEEEECCCCHHHHCCCCEEECCCCCCCCEEEEECCCCHHHHHH
EYYGDPNHYNKIFEANKPLLKDADDIYPGQVLRIPQYF
HHCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCC
>Mature Secondary Structure 
GLFDFVKGIGKKNQAKVEQTTTPASTEPTAQEVANQLLAHVQSLGLPIDGLVVNYNSTT
CHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
DLATIQGKVKSQADKEKIILAVGNIDHVAKVDDQMTVETPEPESKFYTVKAGDNLSKISK
CHHHHHHHHHCCCCCCEEEEEECCCCHHHHCCCCEEECCCCCCCCEEEEECCCCHHHHHH
EYYGDPNHYNKIFEANKPLLKDADDIYPGQVLRIPQYF
HHCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]