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The map label for this gene is mdcF [H]

Identifier: 50083933

GI number: 50083933

Start: 698138

End: 699061

Strand: Direct

Name: mdcF [H]

Synonym: ACIAD0710

Alternate gene names: 50083933

Gene position: 698138-699061 (Clockwise)

Preceding gene: 50083932

Following gene: 50083937

Centisome position: 19.4

GC content: 39.83

Gene sequence:

>924_bases
GTGGTTGTTCAAGTTATTGTTCCGATTTTCCTGTTATTGTTTGCAGGTTATTTGAGTGTATCAATACGTTTGATCACCCC
TGAGCAGATCAAGGCACTCAGTGCTTTTATTATTAAAATTGCGTTACCTGCATTTTTGTTTTTTGCGCTTTCCAATAAAA
ACCTGACCGATATTTGGCATCCTTCTTACTTTATTGCTTATGGTGGTGGTTCACTTCTGATCTTTGCTTTGGCATTTCTT
TGTTATCGTAAAGGATTTGGTTATGCATTGACACCTACAGCAATCCTGTCGATGGGTGGATCTATGTCAAATACAGGATT
TATTGGTACTGCGGTCTTAACATTATTGATGGGGGCTCATGCTGCAATTTATATCTCATTGACGTTGATTTTAGAAAATT
TGCTCATACTTGCACTGGTTTTGGCATTGGCCGAAGCAGGGTTACATGGTCAGCAAAATATTTGGGCTGTTGTTCGTAAA
ACAGCAGTAAGCTTGCTCAAAAATCCTGTAATTATTGCAATCATTTTAGGAATGAGTTTTATTTTTCTGGATATTAAGCC
ACCGACTTTACTCAATCAGTCTTTAGAGCTGCTTGGAAAAACAGCATCACCCTTGGCATTATTTGCAATTGGTGGCAGTT
TGGTGGGTATGGGAATGACTGCATTGAACCTACAAAGCTACTTACTGGTGTCATTTAAAGTGGTATTGATGCCGTTGGTT
ATTTACAGTCTATTACGGATATTGCCTGGTGTGAGTCAAGAAATGCTCCACGCGGGAACTATTCTGGCTGCCTTACCTAT
GCCAATTGCTTTTGGAATTTTTGGTCAGGCTTATGGTTTGAATGAGCAGGCCTTGACGCCTTTGATGCTGAGTACCATTT
TAGGATTTATGGGCATTAGCGGCTTGATTATGTTGTGGTGGTGA

Upstream 100 bases:

>100_bases
GTTTGAAACAGTTATTTAAAGCATTTTCTCATTGATTCACGCGAGAGAAAGATTTTCAGATCGAAATTTTTCTCTTCTGA
CAAAACCCAAGGAAGCCTAG

Downstream 100 bases:

>100_bases
AACTGCCTTAAATGTGTAAGACAGTTTCTGATATTTTTTTAGTTTCAGCTTTTTGCTTTGCTTGCAGGTGCTTTGGCTTT
TGCAGCAATCAGTTGATTGA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MVVQVIVPIFLLLFAGYLSVSIRLITPEQIKALSAFIIKIALPAFLFFALSNKNLTDIWHPSYFIAYGGGSLLIFALAFL
CYRKGFGYALTPTAILSMGGSMSNTGFIGTAVLTLLMGAHAAIYISLTLILENLLILALVLALAEAGLHGQQNIWAVVRK
TAVSLLKNPVIIAIILGMSFIFLDIKPPTLLNQSLELLGKTASPLALFAIGGSLVGMGMTALNLQSYLLVSFKVVLMPLV
IYSLLRILPGVSQEMLHAGTILAALPMPIAFGIFGQAYGLNEQALTPLMLSTILGFMGISGLIMLWW

Sequences:

>Translated_307_residues
MVVQVIVPIFLLLFAGYLSVSIRLITPEQIKALSAFIIKIALPAFLFFALSNKNLTDIWHPSYFIAYGGGSLLIFALAFL
CYRKGFGYALTPTAILSMGGSMSNTGFIGTAVLTLLMGAHAAIYISLTLILENLLILALVLALAEAGLHGQQNIWAVVRK
TAVSLLKNPVIIAIILGMSFIFLDIKPPTLLNQSLELLGKTASPLALFAIGGSLVGMGMTALNLQSYLLVSFKVVLMPLV
IYSLLRILPGVSQEMLHAGTILAALPMPIAFGIFGQAYGLNEQALTPLMLSTILGFMGISGLIMLWW
>Mature_307_residues
MVVQVIVPIFLLLFAGYLSVSIRLITPEQIKALSAFIIKIALPAFLFFALSNKNLTDIWHPSYFIAYGGGSLLIFALAFL
CYRKGFGYALTPTAILSMGGSMSNTGFIGTAVLTLLMGAHAAIYISLTLILENLLILALVLALAEAGLHGQQNIWAVVRK
TAVSLLKNPVIIAIILGMSFIFLDIKPPTLLNQSLELLGKTASPLALFAIGGSLVGMGMTALNLQSYLLVSFKVVLMPLV
IYSLLRILPGVSQEMLHAGTILAALPMPIAFGIFGQAYGLNEQALTPLMLSTILGFMGISGLIMLWW

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32931; Mature: 32931

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVQVIVPIFLLLFAGYLSVSIRLITPEQIKALSAFIIKIALPAFLFFALSNKNLTDIWH
CHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
PSYFIAYGGGSLLIFALAFLCYRKGFGYALTPTAILSMGGSMSNTGFIGTAVLTLLMGAH
CCEEEEECCHHHHHHHHHHHHHHCCCCCEECHHHHHHCCCCCCCCCHHHHHHHHHHHHCH
AAIYISLTLILENLLILALVLALAEAGLHGQQNIWAVVRKTAVSLLKNPVIIAIILGMSF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IFLDIKPPTLLNQSLELLGKTASPLALFAIGGSLVGMGMTALNLQSYLLVSFKVVLMPLV
EEEECCCCHHHHHHHHHHCCCCCCCEEEHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH
IYSLLRILPGVSQEMLHAGTILAALPMPIAFGIFGQAYGLNEQALTPLMLSTILGFMGIS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GLIMLWW
HHEEECC
>Mature Secondary Structure
MVVQVIVPIFLLLFAGYLSVSIRLITPEQIKALSAFIIKIALPAFLFFALSNKNLTDIWH
CHHHHHHHHHHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
PSYFIAYGGGSLLIFALAFLCYRKGFGYALTPTAILSMGGSMSNTGFIGTAVLTLLMGAH
CCEEEEECCHHHHHHHHHHHHHHCCCCCEECHHHHHHCCCCCCCCCHHHHHHHHHHHHCH
AAIYISLTLILENLLILALVLALAEAGLHGQQNIWAVVRKTAVSLLKNPVIIAIILGMSF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
IFLDIKPPTLLNQSLELLGKTASPLALFAIGGSLVGMGMTALNLQSYLLVSFKVVLMPLV
EEEECCCCHHHHHHHHHHCCCCCCCEEEHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH
IYSLLRILPGVSQEMLHAGTILAALPMPIAFGIFGQAYGLNEQALTPLMLSTILGFMGIS
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GLIMLWW
HHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]