Click here to switch to the map view.

The map label for this gene is lpsC [H]

Identifier: 50083836

GI number: 50083836

Start: 590865

End: 591632

Strand: Direct

Name: lpsC [H]

Synonym: ACIAD0601

Alternate gene names: 50083836

Gene position: 590865-591632 (Clockwise)

Preceding gene: 50083835

Following gene: 50083837

Centisome position: 16.42

GC content: 40.49

Gene sequence:

>768_bases
ATGATCCCTAAAATTGCGTGTAGCGTGTATATCGTGACCCTTAATTGTGAGGCGTGGTTATTCAAGACCTTGCAAAGTGT
GCAAGATTTTGATGAAGTCATTATTTTAGATTCGGGCAGTATCGATGCCACCTATGCCATTGCACAGCAGTTTGATAATG
TGCACATTGAGCATCAGGACTGGCAGGGCTATGCGGGTCAAAAAAGTTTGGCTTTAGCCAAATGTCGCAATGATTGGGTA
TTGAATTTAGACGGCGACGAAGTACTTTCTGAAGGGCTGAAGCAGGAAATTGCTGAGGTGATTCAGCATAACCAGCTTGA
TGCCTTAATTACACCGATTAACGATGTGTTTTTGGGTGTACCCAACAGCAAACATACTAAGAAACATGCCAAGGTGCGTT
TCTTTCGCAAGGCCAAAGGTCAGTATGATCTGGCCAATAAAGTCCATGAAAATGTGATTGTAGAGGGTGAATCTCGCCGT
GCCGTGCATGATATTTATCATTTCGGTGAGTCGAGTATTTTCGTTAAAGTAGAGAAAAATAATCAATACTCCAATTTAAA
AGCCGCTGAAAAATTTCAAAAAGGTAAAACGCCGAGTCTGGCAAAACTGGTGTTGGTGATGCCGATGACGTTTATTAAGT
CGTATTTTATCCGTCGTAGTTGTTTCAACGGCTGGCGTGGTTTTGTCAACAGTATGATCAATGCCTTTTATGCTTTTTTA
AAAGAAGCCAAATTGTTTGAACAAAGTATGAATAAAGACAAGAAATAA

Upstream 100 bases:

>100_bases
ATGATCCAGAGCATCCATTTAATATTCCGCGCGTGAGTACCCACGGCGCAATGAATGCCCTGCAAATGCGCATTGCGCTT
GCCAAAGGACGCTATAAACT

Downstream 100 bases:

>100_bases
GTAGATTGATGATGAAAATTGTTCAAATATTGGCAACAAGTGGCGGATTGGGAGGCTTAGAACAGCATACGTTTAATCTG
ACCAATGAGTTGGCGTTGAG

Product: lipopolysaccharide core biosynthesis glycosyl transferase LpsC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MIPKIACSVYIVTLNCEAWLFKTLQSVQDFDEVIILDSGSIDATYAIAQQFDNVHIEHQDWQGYAGQKSLALAKCRNDWV
LNLDGDEVLSEGLKQEIAEVIQHNQLDALITPINDVFLGVPNSKHTKKHAKVRFFRKAKGQYDLANKVHENVIVEGESRR
AVHDIYHFGESSIFVKVEKNNQYSNLKAAEKFQKGKTPSLAKLVLVMPMTFIKSYFIRRSCFNGWRGFVNSMINAFYAFL
KEAKLFEQSMNKDKK

Sequences:

>Translated_255_residues
MIPKIACSVYIVTLNCEAWLFKTLQSVQDFDEVIILDSGSIDATYAIAQQFDNVHIEHQDWQGYAGQKSLALAKCRNDWV
LNLDGDEVLSEGLKQEIAEVIQHNQLDALITPINDVFLGVPNSKHTKKHAKVRFFRKAKGQYDLANKVHENVIVEGESRR
AVHDIYHFGESSIFVKVEKNNQYSNLKAAEKFQKGKTPSLAKLVLVMPMTFIKSYFIRRSCFNGWRGFVNSMINAFYAFL
KEAKLFEQSMNKDKK
>Mature_255_residues
MIPKIACSVYIVTLNCEAWLFKTLQSVQDFDEVIILDSGSIDATYAIAQQFDNVHIEHQDWQGYAGQKSLALAKCRNDWV
LNLDGDEVLSEGLKQEIAEVIQHNQLDALITPINDVFLGVPNSKHTKKHAKVRFFRKAKGQYDLANKVHENVIVEGESRR
AVHDIYHFGESSIFVKVEKNNQYSNLKAAEKFQKGKTPSLAKLVLVMPMTFIKSYFIRRSCFNGWRGFVNSMINAFYAFL
KEAKLFEQSMNKDKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 29186; Mature: 29186

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPKIACSVYIVTLNCEAWLFKTLQSVQDFDEVIILDSGSIDATYAIAQQFDNVHIEHQD
CCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCEEECCC
WQGYAGQKSLALAKCRNDWVLNLDGDEVLSEGLKQEIAEVIQHNQLDALITPINDVFLGV
CCCCCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHEEEC
PNSKHTKKHAKVRFFRKAKGQYDLANKVHENVIVEGESRRAVHDIYHFGESSIFVKVEKN
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCEEEECCCCHHHHHHHHCCCCEEEEEEECC
NQYSNLKAAEKFQKGKTPSLAKLVLVMPMTFIKSYFIRRSCFNGWRGFVNSMINAFYAFL
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEAKLFEQSMNKDKK
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MIPKIACSVYIVTLNCEAWLFKTLQSVQDFDEVIILDSGSIDATYAIAQQFDNVHIEHQD
CCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCEEECCC
WQGYAGQKSLALAKCRNDWVLNLDGDEVLSEGLKQEIAEVIQHNQLDALITPINDVFLGV
CCCCCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHEEEC
PNSKHTKKHAKVRFFRKAKGQYDLANKVHENVIVEGESRRAVHDIYHFGESSIFVKVEKN
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCEEEECCCCHHHHHHHHCCCCEEEEEEECC
NQYSNLKAAEKFQKGKTPSLAKLVLVMPMTFIKSYFIRRSCFNGWRGFVNSMINAFYAFL
CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KEAKLFEQSMNKDKK
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]