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The map label for this gene is alkB

Identifier: 50083609

GI number: 50083609

Start: 340217

End: 340825

Strand: Direct

Name: alkB

Synonym: ACIAD0345

Alternate gene names: NA

Gene position: 340217-340825 (Clockwise)

Preceding gene: 50083608

Following gene: 50083611

Centisome position: 9.45

GC content: 43.35

Gene sequence:

>609_bases
ATGACGCTGGATTTATTTGCACCACAGCCTAAAACGAACTTATTACCCTACGATGGTGACGTTGAGGATTATGGATGCTT
TATTTCTACAGCCGAAGCCGAGCAGTATTTTCAATATTTTTTGAAGCATCTGGCTTGGCGGCATGATGAAGCACGTTTAT
ACGGCAAGCATTTTATTACACCACGTCAAGTGGCATGGTATGGCGATGATCATTATCGTTATGCTTATTCGGGAATAATG
CGTGATTCACTACCATGGGATCCGCAGCTTCTCATTCTAAAACAGCAGATTGAGCAGACATTAGCAGAGCGTTTTAATTC
TTGTCTAGCAAATTTGTATCAGGAAGGTACGCAGGGAATGGCTTGGCACAGTGATGGCGATATGTCTCTGGCCAAGCAAA
CCACGATTGCTTCTTTAAGCTTAGGCGCCACCCGAAAATTTTGTTTTCGTCATCTTCGCACCAAAGAAAAAATCGAGATG
CAGCTACAATCTGGGCAGCTCATTGTGATGCGTGGTGAAACACAACAGCATTGGCAGCATGCCATCATGAAATCACAAAA
GGTGATTCATCCCAGAATCAATCTCACTTTCCGACAGTTCCTGTTATAA

Upstream 100 bases:

>100_bases
GCGTGATCCGTTCAACTGGGGCGATTGGTGAATATCATTGGCATCGTAGCCGTAAATTGGCTTTACTTTCATGTGAAATG
GCAAAATATGGGAATCAGGG

Downstream 100 bases:

>100_bases
ATCGTTCAACGCAAGTGATCACGATTCTTATCCTTTGACGTTTTAAAGTGGCTTTAATGTAGTGATTTCTCGATTTGGAT
TAAGGCCAGCGATTTCTGTT

Product: DNA repair system specific for alkylated DNA

Products: NA

Alternate protein names: Alkylated DNA Repair Protein; DNA-N1-Methyladenine Dioxygenase; DNA Repair System Specific For Alkylated DNA; 2OG-Fe(II) Oxygenase Superfamily Protein; 2OG-Fe(II) Oxygenase Family Oxidoreductase; Oxidoreductase 2OG-Fe(II) Oxygenase Family; Alkylated DNA Repair Protein-Like Protein; Oxidoreductase 2OG-Fe(II) Oxygenase Family Protein; CRISPR-Associated Family Protein; DNA Repair System Specific For Alkylated DNA Protein; 2OG-Fe(II) Oxygenase Family Protein; DNA Repair System Protein; Alkylated DNA Repair Protein AlkB

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MTLDLFAPQPKTNLLPYDGDVEDYGCFISTAEAEQYFQYFLKHLAWRHDEARLYGKHFITPRQVAWYGDDHYRYAYSGIM
RDSLPWDPQLLILKQQIEQTLAERFNSCLANLYQEGTQGMAWHSDGDMSLAKQTTIASLSLGATRKFCFRHLRTKEKIEM
QLQSGQLIVMRGETQQHWQHAIMKSQKVIHPRINLTFRQFLL

Sequences:

>Translated_202_residues
MTLDLFAPQPKTNLLPYDGDVEDYGCFISTAEAEQYFQYFLKHLAWRHDEARLYGKHFITPRQVAWYGDDHYRYAYSGIM
RDSLPWDPQLLILKQQIEQTLAERFNSCLANLYQEGTQGMAWHSDGDMSLAKQTTIASLSLGATRKFCFRHLRTKEKIEM
QLQSGQLIVMRGETQQHWQHAIMKSQKVIHPRINLTFRQFLL
>Mature_201_residues
TLDLFAPQPKTNLLPYDGDVEDYGCFISTAEAEQYFQYFLKHLAWRHDEARLYGKHFITPRQVAWYGDDHYRYAYSGIMR
DSLPWDPQLLILKQQIEQTLAERFNSCLANLYQEGTQGMAWHSDGDMSLAKQTTIASLSLGATRKFCFRHLRTKEKIEMQ
LQSGQLIVMRGETQQHWQHAIMKSQKVIHPRINLTFRQFLL

Specific function: Unknown

COG id: COG3145

COG function: function code L; Alkylated DNA repair protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI224451107, Length=194, Percent_Identity=34.020618556701, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI48717226, Length=194, Percent_Identity=34.020618556701, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI224451103, Length=194, Percent_Identity=34.020618556701, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI21040275, Length=185, Percent_Identity=35.6756756756757, Blast_Score=114, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23749; Mature: 23618

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDLFAPQPKTNLLPYDGDVEDYGCFISTAEAEQYFQYFLKHLAWRHDEARLYGKHFIT
CEECCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
PRQVAWYGDDHYRYAYSGIMRDSLPWDPQLLILKQQIEQTLAERFNSCLANLYQEGTQGM
CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AWHSDGDMSLAKQTTIASLSLGATRKFCFRHLRTKEKIEMQLQSGQLIVMRGETQQHWQH
EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHEECCCCEEEEECCCHHHHHH
AIMKSQKVIHPRINLTFRQFLL
HHHHHCCCCCCCCCCHHHHHCC
>Mature Secondary Structure 
TLDLFAPQPKTNLLPYDGDVEDYGCFISTAEAEQYFQYFLKHLAWRHDEARLYGKHFIT
EECCCCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
PRQVAWYGDDHYRYAYSGIMRDSLPWDPQLLILKQQIEQTLAERFNSCLANLYQEGTQGM
CCEEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
AWHSDGDMSLAKQTTIASLSLGATRKFCFRHLRTKEKIEMQLQSGQLIVMRGETQQHWQH
EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHEECCCCEEEEECCCHHHHHH
AIMKSQKVIHPRINLTFRQFLL
HHHHHCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA