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The map label for this gene is oprD [H]

Identifier: 50083518

GI number: 50083518

Start: 239385

End: 240686

Strand: Reverse

Name: oprD [H]

Synonym: ACIAD0240

Alternate gene names: 50083518

Gene position: 240686-239385 (Counterclockwise)

Preceding gene: 50083520

Following gene: 50083515

Centisome position: 6.69

GC content: 42.86

Gene sequence:

>1302_bases
ATGCTAAAGGCACAAAAGCTGACGTTAGCCGTTGTAATTAACGCTGTACTTATTTCTTCAGCATACGCAAGCGAACAAAG
CGATGCAAAAGGATTTGTTGAAGGTGCTCAGGGTTCTATTTTACTGCGCAATGGTTTTATCCAGCGCGATAAAAAGAAAG
GACTGCAAGATAAAAATTCTTGGGTTCAATCGGCGATGCTTAATCTTGAGTCTGGCTTTACTCAAGGCCCGATTGGTTTT
GCTGCTGGTGTAGTCGGCGATTTTTCATTTAAGTTGGGTGATAATTATCATTCTGGCAACAGCATGGTTGCACTGAAAAA
CGATGGACGTGAAGATGCCAACGGTCGCGTTGATCCATACGATCAATGGACACGTGGTGGTGGCTTTGTAAAAGCACGTG
CGTCGAATACCACCTTAACCTACGGTACTCAGGTACTTGATTTGCCTGTTTTGGCCAGTATGACCACTCGTAACACGCCA
GAATATTTTGAAGGGACTTTGATTACCAGCCATGAAATAAAAGACCTTGAGCTTGTGGCTGGTAAATTCACCAAGAACCA
ACTTCCAGAACATATTGCATCTGACCAAAATGGTTTGGATCGTGCTTATGTCTGGGGTGCCAAATATAAATTTAATGACC
AGTTGAATGCATCGTATTACGGCGCTGATATCAAAGATAAAATTGAGCGTCACTACGTGAGTGCTGCTTATAAGCAACCA
CTGGCAAATGACAGTTCTCTCAGTTACGAGTGGGCCGGTTATAGCACTAAGTTTAAACCAGGTGCGTCTGTATATGACAA
TACGCCAGTGAATACACGTACAGAAGATCTGAATAACTATATCTGGGCTTTCTCAACAACGTATAGTCAAGGTCCACACT
CAGTGATGGGTGCTTACCAGCAAAATACCGGTGGTATCGGCTATGATTACGGTGTAAACCAAGACGGTGGTCAAAGTATT
TATTTACCAAACTCTTACCTTTCAGACTTTAACAGCAAAGGCGAAAAATCGGTTCAATTGCAATATAACCTCGATTTGGG
CGCGTATAACGTACCGGGCTTGAAGTGGACCACTGCATTTGTTTACGGCTGGGATATCGATATTGACAGCAAGAACATCG
ATAATGCCAACGAGCGTGAGTTCTTTAACCAATTGAGCTATACCGTTCAAAGCGGTTTTGCCAAAGATTTAAAAATCCGT
GCACGTTACTCTATTTTGCGTGAAAGCGACATTGGGGCGAATGGTTATGGCGATACCAACGAAACGCGTATCTTCATTGA
TTTCCCAATCAAGTTCCTTTAA

Upstream 100 bases:

>100_bases
CATAAAAAATGTGTCTTTTTTATAGATTATCTATACAATTTTGTCATTTTCTAAGCCTGCTTAGAAACAAAAATGATGAT
TAAAATTTTCGAGGTATTTA

Downstream 100 bases:

>100_bases
GTCATAAAAAAGCCCTAGCCAGTTCGCTCGCTAGGGCCTTTTAGATATCAAAAATCAAATATCAGCAAACTGGTATTTGA
TTTTTTTATCTTATTTTTTT

Product: outer membrane protein

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MLKAQKLTLAVVINAVLISSAYASEQSDAKGFVEGAQGSILLRNGFIQRDKKKGLQDKNSWVQSAMLNLESGFTQGPIGF
AAGVVGDFSFKLGDNYHSGNSMVALKNDGREDANGRVDPYDQWTRGGGFVKARASNTTLTYGTQVLDLPVLASMTTRNTP
EYFEGTLITSHEIKDLELVAGKFTKNQLPEHIASDQNGLDRAYVWGAKYKFNDQLNASYYGADIKDKIERHYVSAAYKQP
LANDSSLSYEWAGYSTKFKPGASVYDNTPVNTRTEDLNNYIWAFSTTYSQGPHSVMGAYQQNTGGIGYDYGVNQDGGQSI
YLPNSYLSDFNSKGEKSVQLQYNLDLGAYNVPGLKWTTAFVYGWDIDIDSKNIDNANEREFFNQLSYTVQSGFAKDLKIR
ARYSILRESDIGANGYGDTNETRIFIDFPIKFL

Sequences:

>Translated_433_residues
MLKAQKLTLAVVINAVLISSAYASEQSDAKGFVEGAQGSILLRNGFIQRDKKKGLQDKNSWVQSAMLNLESGFTQGPIGF
AAGVVGDFSFKLGDNYHSGNSMVALKNDGREDANGRVDPYDQWTRGGGFVKARASNTTLTYGTQVLDLPVLASMTTRNTP
EYFEGTLITSHEIKDLELVAGKFTKNQLPEHIASDQNGLDRAYVWGAKYKFNDQLNASYYGADIKDKIERHYVSAAYKQP
LANDSSLSYEWAGYSTKFKPGASVYDNTPVNTRTEDLNNYIWAFSTTYSQGPHSVMGAYQQNTGGIGYDYGVNQDGGQSI
YLPNSYLSDFNSKGEKSVQLQYNLDLGAYNVPGLKWTTAFVYGWDIDIDSKNIDNANEREFFNQLSYTVQSGFAKDLKIR
ARYSILRESDIGANGYGDTNETRIFIDFPIKFL
>Mature_433_residues
MLKAQKLTLAVVINAVLISSAYASEQSDAKGFVEGAQGSILLRNGFIQRDKKKGLQDKNSWVQSAMLNLESGFTQGPIGF
AAGVVGDFSFKLGDNYHSGNSMVALKNDGREDANGRVDPYDQWTRGGGFVKARASNTTLTYGTQVLDLPVLASMTTRNTP
EYFEGTLITSHEIKDLELVAGKFTKNQLPEHIASDQNGLDRAYVWGAKYKFNDQLNASYYGADIKDKIERHYVSAAYKQP
LANDSSLSYEWAGYSTKFKPGASVYDNTPVNTRTEDLNNYIWAFSTTYSQGPHSVMGAYQQNTGGIGYDYGVNQDGGQSI
YLPNSYLSDFNSKGEKSVQLQYNLDLGAYNVPGLKWTTAFVYGWDIDIDSKNIDNANEREFFNQLSYTVQSGFAKDLKIR
ARYSILRESDIGANGYGDTNETRIFIDFPIKFL

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 48049; Mature: 48049

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAQKLTLAVVINAVLISSAYASEQSDAKGFVEGAQGSILLRNGFIQRDKKKGLQDKNS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCCHHHCCCCHHHH
WVQSAMLNLESGFTQGPIGFAAGVVGDFSFKLGDNYHSGNSMVALKNDGREDANGRVDPY
HHHHHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCC
DQWTRGGGFVKARASNTTLTYGTQVLDLPVLASMTTRNTPEYFEGTLITSHEIKDLELVA
HHHCCCCCEEEEECCCCEEEECCEEECHHHHHHHHCCCCHHHHCCEEEECCCCCCEEEEC
GKFTKNQLPEHIASDQNGLDRAYVWGAKYKFNDQLNASYYGADIKDKIERHYVSAAYKQP
CCCHHHHCHHHHHCCCCCCCEEEEEECEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCC
LANDSSLSYEWAGYSTKFKPGASVYDNTPVNTRTEDLNNYIWAFSTTYSQGPHSVMGAYQ
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEEECCCCCCHHHHHHHH
QNTGGIGYDYGVNQDGGQSIYLPNSYLSDFNSKGEKSVQLQYNLDLGAYNVPGLKWTTAF
CCCCCCCCCCCCCCCCCCEEEECHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEEE
VYGWDIDIDSKNIDNANEREFFNQLSYTVQSGFAKDLKIRARYSILRESDIGANGYGDTN
EEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEEEHHHHHHHCCCCCCCCCCCC
ETRIFIDFPIKFL
CEEEEEECCCCCC
>Mature Secondary Structure
MLKAQKLTLAVVINAVLISSAYASEQSDAKGFVEGAQGSILLRNGFIQRDKKKGLQDKNS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCCHHHCCCCHHHH
WVQSAMLNLESGFTQGPIGFAAGVVGDFSFKLGDNYHSGNSMVALKNDGREDANGRVDPY
HHHHHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCC
DQWTRGGGFVKARASNTTLTYGTQVLDLPVLASMTTRNTPEYFEGTLITSHEIKDLELVA
HHHCCCCCEEEEECCCCEEEECCEEECHHHHHHHHCCCCHHHHCCEEEECCCCCCEEEEC
GKFTKNQLPEHIASDQNGLDRAYVWGAKYKFNDQLNASYYGADIKDKIERHYVSAAYKQP
CCCHHHHCHHHHHCCCCCCCEEEEEECEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCC
LANDSSLSYEWAGYSTKFKPGASVYDNTPVNTRTEDLNNYIWAFSTTYSQGPHSVMGAYQ
CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEEECCCCCCHHHHHHHH
QNTGGIGYDYGVNQDGGQSIYLPNSYLSDFNSKGEKSVQLQYNLDLGAYNVPGLKWTTAF
CCCCCCCCCCCCCCCCCCEEEECHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCEEEEEE
VYGWDIDIDSKNIDNANEREFFNQLSYTVQSGFAKDLKIRARYSILRESDIGANGYGDTN
EEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHEEEEEHHHHHHHCCCCCCCCCCCC
ETRIFIDFPIKFL
CEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]