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The map label for this gene is ycbS [H]

Identifier: 50083410

GI number: 50083410

Start: 121944

End: 124553

Strand: Direct

Name: ycbS [H]

Synonym: ACIAD0121

Alternate gene names: 50083410

Gene position: 121944-124553 (Clockwise)

Preceding gene: 50083409

Following gene: 50083411

Centisome position: 3.39

GC content: 43.98

Gene sequence:

>2610_bases
ATGGTCAAGCATAGCCGCCCTTTGTGGGCACATTCATTTTTATCTGTGGTGATTCACTCGTTACTGTTTCATTCGGGTCA
GTTGTATGCCGATTCGATTGAAACAGAAAGTACATCCGCTTCAGAAGCTTATACATTTGATCCCCATCTTTTTAAGGGAA
CAGGGCTTAATCAAGAACTGATCGAACGTTTCAATCATTCCAGTCAATTACAGGCTGGACAATATACGCTTGATGTGTAT
GTCAATAAACGCTTTATCGATCGACAACAGATTAAGTTGGTAGATGGTTCTGAACAGGCGAATACGATTGATGCCTGCTG
GACCACTTCTTTGCTGGAACGAGCAGGTATTTTGGGGAGTCCAGATTTCCAGAAAACGCGTGCTGAAGCAACGCATCAGA
TTCTGGCAGATGAATGTTTAAAGCTTGACCAGATTGCACCAGGAAGCCAAAGCGATTTTGATTTTTCCAACTTGCGGCTG
GATTTGAGTATCCCACAACAGTTTTTAAAGAACCTGCCGCGCGGTTATGTCAGTTCAGAGGAACTTGACGCTGGAGAAAG
TATTGGGTTCGTTAACTATTCAGGCAATTACTATCGTACAGAAAGTAAATTTGAGCATAAACAACGTCATGAATCAGGCT
TTGTCAGCTTAAATGCTGGTGTTAATGCGGGAAAGTGGCAGTATCGCCAACAAAGTAATTTTTCGATCGATAACGACAGT
CATCGTCACTGGAATCATATTCGAAGCTACTTACAACGCCCAATCGATTCGTGGGCATCTGTTCTTACACTCGGTCAACA
ATATGGATCAGGACAGTTTTTCTCAACATTGCCATATCTGGGGCTAAGTATACAGACCGATGAGCGTATGCGTCCCGATT
CTATGCGGGGCTATGCGCCTGTTATTCGGGGAACCGCGCAAACCAATGCTAAAGTGTCGATTGAACAGAATGGTCGAGAA
ATCTATCAGATCAGTGTTGCGCCAGGCCCATTTGAAATTAAGGATCTCTATCCGACCAATTTTGAAGGCAATTTAAAGGT
GGTGGTTACAGAGGCCGATGGAACTGTACATACGCATGATGTACCTTATGCGGCTGTTCCAAACTCATTGAGAGCAGGTC
TTTATAATTATAATTTTTCATTGGGTCGAACAGACCTTGACCGTGCACAGGATGCCTATTTTTCAGATTTTAACTATGAA
TATGGCTTGAGTAACAGTATTACTCTCAATGGGGGCGTACGGTTGAGTCAGAATTATCAGGCCGCGCTGTTTGGGGGAGT
CTGGGGCTCTTCTTTGGGGGCACTGGGCACCAATGTGACTTATTCTCGAGCTGAGTTGGCCAATCTATCAGGCAAAGATA
CAACGGATGGCTGGATGGCCAATATTACTTACAGTAAAACCATTCAGTCCACCAATACCACAATTGCGATTGCAGGATAT
CGATATTCAACGGAAGGTTATCGTGAACTCAATGATGTACTGGGTTTGGCCTATGCTGCCAAACAAGGAGGAGACTGGAG
TTCCAATACCTATCTACAACGTTCACGTTTTCAGATCAATTTGAGTCAGCAATTTGGCAGGTTTGGGAGCTTTTACGTTG
CGGGTTCCACGCAAAGCTATCGCGATGAACGTAAACGCGATACCGCATTTCAGGCGGGATTTAGTAAAAGTATTGGCATT
ATGAGTTTCAATTTGAACTATACACGTCAGAAAGTCTATAGCATGCGTGACGACAGCTTAAAACACGAATATTCGGATAA
TTTTGGAGGTATTAGCGTGCATATTCCTTTAGGGAAAGCGCGTAATCCACTACGTCCAACATTAAGTGCTTATTACAACC
AGAGTAAGAACAATGAGAATTATCAGCTCGCATTGAATGGCGCACTGGATCCAAATTACAGTCTTAATTATACCCTTGGG
GTAAATGGATCGTCTGATCAGACCGATACCACCTATACAGCCGGGCTATATAAACGTTTCGCTTCGCTTCAATTGGGGGC
CAATACCTCGTATGGCAATCAGTACTGGCAAAATTCGATGAGTGCTAATGGTGCAGTGGCATTGCATTCAGGAGGCGTTA
CATTTGGCCCATATCTGACGGAAACATTTGGTCTCATTGAAGCCAAAGGTGCAAAAGGTGCCAAAGTGATCAGTTCACCT
TATAGCAAAATTGACCGCTTTGGTTACGCGCTGGTGCCAAGTCTGAGTCCATATCGTTACAACAGCGTGATTTTAGATCC
GCAAGGTATTGCCAATAATATTGAGCTTGAGGGCGGAGAGCAGCGTGTCGCGCCGTATGCAGGTGCCAGTGTAAAAATTA
AGTTTGTTACTCGAACAGGCTATAGCGTACTCATTCAAAGCCGTCTAAATAATCAGCACATGATTCCAATGGGAACAGAT
GTACTCAATGCCAATGAAGAAGTGATTGGCATGGTTGGACAAGGGGGGCAAATGTATTTGCGTGTTGCACAACCAAAAGG
GATATTACATTTGCGCTGGACTGATCAGCAGGGTGCATCAAGCTGTTCGCTGCCTTATGCAATCAGTGACATCGAACTGA
ATCAGCCTTTGATTAAATTAAGTGCAGTGTGTGAGATAGGGGCTAAATAA

Upstream 100 bases:

>100_bases
GGTAGGTACGGAAGTGACCTTGCGTCTGGTCAATGATTATGGGGCTTATGTAAATCAGCTTATTCAACCCCAACAGCACT
CCAATTAAGGTAGGCTGATG

Downstream 100 bases:

>100_bases
ATGATACTTCATAATAAAAATTTTCAGTTAAATTTTAGATTTCTCGTGTTATGTATTTCCTTCTTATTGATCGTGCTGAT
CTCAGGTCAGAGTTGGGCAA

Product: outer membrane usher protein ( fimbrial usher protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 869; Mature: 869

Protein sequence:

>869_residues
MVKHSRPLWAHSFLSVVIHSLLFHSGQLYADSIETESTSASEAYTFDPHLFKGTGLNQELIERFNHSSQLQAGQYTLDVY
VNKRFIDRQQIKLVDGSEQANTIDACWTTSLLERAGILGSPDFQKTRAEATHQILADECLKLDQIAPGSQSDFDFSNLRL
DLSIPQQFLKNLPRGYVSSEELDAGESIGFVNYSGNYYRTESKFEHKQRHESGFVSLNAGVNAGKWQYRQQSNFSIDNDS
HRHWNHIRSYLQRPIDSWASVLTLGQQYGSGQFFSTLPYLGLSIQTDERMRPDSMRGYAPVIRGTAQTNAKVSIEQNGRE
IYQISVAPGPFEIKDLYPTNFEGNLKVVVTEADGTVHTHDVPYAAVPNSLRAGLYNYNFSLGRTDLDRAQDAYFSDFNYE
YGLSNSITLNGGVRLSQNYQAALFGGVWGSSLGALGTNVTYSRAELANLSGKDTTDGWMANITYSKTIQSTNTTIAIAGY
RYSTEGYRELNDVLGLAYAAKQGGDWSSNTYLQRSRFQINLSQQFGRFGSFYVAGSTQSYRDERKRDTAFQAGFSKSIGI
MSFNLNYTRQKVYSMRDDSLKHEYSDNFGGISVHIPLGKARNPLRPTLSAYYNQSKNNENYQLALNGALDPNYSLNYTLG
VNGSSDQTDTTYTAGLYKRFASLQLGANTSYGNQYWQNSMSANGAVALHSGGVTFGPYLTETFGLIEAKGAKGAKVISSP
YSKIDRFGYALVPSLSPYRYNSVILDPQGIANNIELEGGEQRVAPYAGASVKIKFVTRTGYSVLIQSRLNNQHMIPMGTD
VLNANEEVIGMVGQGGQMYLRVAQPKGILHLRWTDQQGASSCSLPYAISDIELNQPLIKLSAVCEIGAK

Sequences:

>Translated_869_residues
MVKHSRPLWAHSFLSVVIHSLLFHSGQLYADSIETESTSASEAYTFDPHLFKGTGLNQELIERFNHSSQLQAGQYTLDVY
VNKRFIDRQQIKLVDGSEQANTIDACWTTSLLERAGILGSPDFQKTRAEATHQILADECLKLDQIAPGSQSDFDFSNLRL
DLSIPQQFLKNLPRGYVSSEELDAGESIGFVNYSGNYYRTESKFEHKQRHESGFVSLNAGVNAGKWQYRQQSNFSIDNDS
HRHWNHIRSYLQRPIDSWASVLTLGQQYGSGQFFSTLPYLGLSIQTDERMRPDSMRGYAPVIRGTAQTNAKVSIEQNGRE
IYQISVAPGPFEIKDLYPTNFEGNLKVVVTEADGTVHTHDVPYAAVPNSLRAGLYNYNFSLGRTDLDRAQDAYFSDFNYE
YGLSNSITLNGGVRLSQNYQAALFGGVWGSSLGALGTNVTYSRAELANLSGKDTTDGWMANITYSKTIQSTNTTIAIAGY
RYSTEGYRELNDVLGLAYAAKQGGDWSSNTYLQRSRFQINLSQQFGRFGSFYVAGSTQSYRDERKRDTAFQAGFSKSIGI
MSFNLNYTRQKVYSMRDDSLKHEYSDNFGGISVHIPLGKARNPLRPTLSAYYNQSKNNENYQLALNGALDPNYSLNYTLG
VNGSSDQTDTTYTAGLYKRFASLQLGANTSYGNQYWQNSMSANGAVALHSGGVTFGPYLTETFGLIEAKGAKGAKVISSP
YSKIDRFGYALVPSLSPYRYNSVILDPQGIANNIELEGGEQRVAPYAGASVKIKFVTRTGYSVLIQSRLNNQHMIPMGTD
VLNANEEVIGMVGQGGQMYLRVAQPKGILHLRWTDQQGASSCSLPYAISDIELNQPLIKLSAVCEIGAK
>Mature_869_residues
MVKHSRPLWAHSFLSVVIHSLLFHSGQLYADSIETESTSASEAYTFDPHLFKGTGLNQELIERFNHSSQLQAGQYTLDVY
VNKRFIDRQQIKLVDGSEQANTIDACWTTSLLERAGILGSPDFQKTRAEATHQILADECLKLDQIAPGSQSDFDFSNLRL
DLSIPQQFLKNLPRGYVSSEELDAGESIGFVNYSGNYYRTESKFEHKQRHESGFVSLNAGVNAGKWQYRQQSNFSIDNDS
HRHWNHIRSYLQRPIDSWASVLTLGQQYGSGQFFSTLPYLGLSIQTDERMRPDSMRGYAPVIRGTAQTNAKVSIEQNGRE
IYQISVAPGPFEIKDLYPTNFEGNLKVVVTEADGTVHTHDVPYAAVPNSLRAGLYNYNFSLGRTDLDRAQDAYFSDFNYE
YGLSNSITLNGGVRLSQNYQAALFGGVWGSSLGALGTNVTYSRAELANLSGKDTTDGWMANITYSKTIQSTNTTIAIAGY
RYSTEGYRELNDVLGLAYAAKQGGDWSSNTYLQRSRFQINLSQQFGRFGSFYVAGSTQSYRDERKRDTAFQAGFSKSIGI
MSFNLNYTRQKVYSMRDDSLKHEYSDNFGGISVHIPLGKARNPLRPTLSAYYNQSKNNENYQLALNGALDPNYSLNYTLG
VNGSSDQTDTTYTAGLYKRFASLQLGANTSYGNQYWQNSMSANGAVALHSGGVTFGPYLTETFGLIEAKGAKGAKVISSP
YSKIDRFGYALVPSLSPYRYNSVILDPQGIANNIELEGGEQRVAPYAGASVKIKFVTRTGYSVLIQSRLNNQHMIPMGTD
VLNANEEVIGMVGQGGQMYLRVAQPKGILHLRWTDQQGASSCSLPYAISDIELNQPLIKLSAVCEIGAK

Specific function: Could be involved in the export and assembly of the putative ycbQ fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=854, Percent_Identity=30.0936768149883, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1789533, Length=835, Percent_Identity=31.0179640718563, Blast_Score=349, Evalue=4e-97,
Organism=Escherichia coli, GI1790772, Length=863, Percent_Identity=29.4322132097335, Blast_Score=342, Evalue=5e-95,
Organism=Escherichia coli, GI1786744, Length=867, Percent_Identity=30.1038062283737, Blast_Score=331, Evalue=1e-91,
Organism=Escherichia coli, GI1786332, Length=856, Percent_Identity=29.4392523364486, Blast_Score=322, Evalue=8e-89,
Organism=Escherichia coli, GI1788427, Length=829, Percent_Identity=28.8299155609168, Blast_Score=318, Evalue=1e-87,
Organism=Escherichia coli, GI87081778, Length=447, Percent_Identity=30.6487695749441, Blast_Score=167, Evalue=4e-42,
Organism=Escherichia coli, GI1789610, Length=827, Percent_Identity=22.73276904474, Blast_Score=132, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 96430; Mature: 96430

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKHSRPLWAHSFLSVVIHSLLFHSGQLYADSIETESTSASEAYTFDPHLFKGTGLNQEL
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCEEECCCCCHHH
IERFNHSSQLQAGQYTLDVYVNKRFIDRQQIKLVDGSEQANTIDACWTTSLLERAGILGS
HHHCCCCCCCCCCCEEEEEEEECEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
PDFQKTRAEATHQILADECLKLDQIAPGSQSDFDFSNLRLDLSIPQQFLKNLPRGYVSSE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCC
ELDAGESIGFVNYSGNYYRTESKFEHKQRHESGFVSLNAGVNAGKWQYRQQSNFSIDNDS
CCCCCCCEEEEEECCCEEECCHHHHHHHHHCCCCEEEECCCCCCCEEECCCCCCCCCCCC
HRHWNHIRSYLQRPIDSWASVLTLGQQYGSGQFFSTLPYLGLSIQTDERMRPDSMRGYAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCH
VIRGTAQTNAKVSIEQNGREIYQISVAPGPFEIKDLYPTNFEGNLKVVVTEADGTVHTHD
HEECCCCCCCEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCEEEECC
VPYAAVPNSLRAGLYNYNFSLGRTDLDRAQDAYFSDFNYEYGLSNSITLNGGVRLSQNYQ
CCCHHCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCEEEECCCEEECCCCC
AALFGGVWGSSLGALGTNVTYSRAELANLSGKDTTDGWMANITYSKTIQSTNTTIAIAGY
EEEECCCHHCCHHHCCCCCEECHHHHHCCCCCCCCCCEEEEEEEHHEEECCCCEEEEEEE
RYSTEGYRELNDVLGLAYAAKQGGDWSSNTYLQRSRFQINLSQQFGRFGSFYVAGSTQSY
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECEEEEEEHHHCCCCCCEEEECCCHHH
RDERKRDTAFQAGFSKSIGIMSFNLNYTRQKVYSMRDDSLKHEYSDNFGGISVHIPLGKA
HHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCC
RNPLRPTLSAYYNQSKNNENYQLALNGALDPNYSLNYTLGVNGSSDQTDTTYTAGLYKRF
CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEHHHHHHHH
ASLQLGANTSYGNQYWQNSMSANGAVALHSGGVTFGPYLTETFGLIEAKGAKGAKVISSP
HHEEECCCCCCCHHHHHHCCCCCCEEEEECCCEEECCHHHHHHCCEEECCCCCCHHHHCH
YSKIDRFGYALVPSLSPYRYNSVILDPQGIANNIELEGGEQRVAPYAGASVKIKFVTRTG
HHHHHHCCEEECCCCCCCCCCEEEECCCCCCCCEEECCCCCEECCCCCCEEEEEEEEECC
YSVLIQSRLNNQHMIPMGTDVLNANEEVIGMVGQGGQMYLRVAQPKGILHLRWTDQQGAS
CEEEEEECCCCCEECCCCCHHCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCC
SCSLPYAISDIELNQPLIKLSAVCEIGAK
CCCCCEEEECEECCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MVKHSRPLWAHSFLSVVIHSLLFHSGQLYADSIETESTSASEAYTFDPHLFKGTGLNQEL
CCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEECCCEEECCCCCHHH
IERFNHSSQLQAGQYTLDVYVNKRFIDRQQIKLVDGSEQANTIDACWTTSLLERAGILGS
HHHCCCCCCCCCCCEEEEEEEECEECCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
PDFQKTRAEATHQILADECLKLDQIAPGSQSDFDFSNLRLDLSIPQQFLKNLPRGYVSSE
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCC
ELDAGESIGFVNYSGNYYRTESKFEHKQRHESGFVSLNAGVNAGKWQYRQQSNFSIDNDS
CCCCCCCEEEEEECCCEEECCHHHHHHHHHCCCCEEEECCCCCCCEEECCCCCCCCCCCC
HRHWNHIRSYLQRPIDSWASVLTLGQQYGSGQFFSTLPYLGLSIQTDERMRPDSMRGYAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEECCCCCCCCCCCCCCCH
VIRGTAQTNAKVSIEQNGREIYQISVAPGPFEIKDLYPTNFEGNLKVVVTEADGTVHTHD
HEECCCCCCCEEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCEEEEEEECCCEEEECC
VPYAAVPNSLRAGLYNYNFSLGRTDLDRAQDAYFSDFNYEYGLSNSITLNGGVRLSQNYQ
CCCHHCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCEEEECCCEEECCCCC
AALFGGVWGSSLGALGTNVTYSRAELANLSGKDTTDGWMANITYSKTIQSTNTTIAIAGY
EEEECCCHHCCHHHCCCCCEECHHHHHCCCCCCCCCCEEEEEEEHHEEECCCCEEEEEEE
RYSTEGYRELNDVLGLAYAAKQGGDWSSNTYLQRSRFQINLSQQFGRFGSFYVAGSTQSY
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECEEEEEEHHHCCCCCCEEEECCCHHH
RDERKRDTAFQAGFSKSIGIMSFNLNYTRQKVYSMRDDSLKHEYSDNFGGISVHIPLGKA
HHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCCCCEEEEEECCCC
RNPLRPTLSAYYNQSKNNENYQLALNGALDPNYSLNYTLGVNGSSDQTDTTYTAGLYKRF
CCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEHHHHHHHH
ASLQLGANTSYGNQYWQNSMSANGAVALHSGGVTFGPYLTETFGLIEAKGAKGAKVISSP
HHEEECCCCCCCHHHHHHCCCCCCEEEEECCCEEECCHHHHHHCCEEECCCCCCHHHHCH
YSKIDRFGYALVPSLSPYRYNSVILDPQGIANNIELEGGEQRVAPYAGASVKIKFVTRTG
HHHHHHCCEEECCCCCCCCCCEEEECCCCCCCCEEECCCCCEECCCCCCEEEEEEEEECC
YSVLIQSRLNNQHMIPMGTDVLNANEEVIGMVGQGGQMYLRVAQPKGILHLRWTDQQGAS
CEEEEEECCCCCEECCCCCHHCCCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCC
SCSLPYAISDIELNQPLIKLSAVCEIGAK
CCCCCEEEECEECCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]