Click here to switch to the map view.

The map label for this gene is ytcD [H]

Identifier: 49478216

GI number: 49478216

Start: 3259381

End: 3259725

Strand: Reverse

Name: ytcD [H]

Synonym: BT9727_3187

Alternate gene names: 49478216

Gene position: 3259725-3259381 (Counterclockwise)

Preceding gene: 49478998

Following gene: 49478215

Centisome position: 62.24

GC content: 36.52

Gene sequence:

>345_bases
ATGAAAACATACAATATTCCTGTAGAGGCGACTTTACAGGTTATCGGTGGGAAGTGGAAAGTAGTGATCCTTTGTCATTT
AAAGAAAGACAAAAAGAGAACGTGCGAATTAAAACAATTAATGTCTGGTATTACACAAAAGATGTTAACACAGCAATTAC
GTGAATTAGAAGAAGATGGTGTAATCGAGAGAAAAGTGTATAACCAAGTGCCGCCGAAAGTAGAGTATTCCTTAACTGAT
TACGGTCATTCATTAGATGCTATACTTGATTCTCTTTGTAACTGGGGAGAACATCATCTTGAAAAGAATGGCAACACGTC
TATGCTCATTACAGCAGCTGAATAA

Upstream 100 bases:

>100_bases
AGGGTAAAAAGTACGTACTTTAAGGTGCTATAGATACTTAAAAGTAATATTTAAATCTTTAGCTTACTTGCCTTATAACA
TTATTAAAGGAGATTTTTAT

Downstream 100 bases:

>100_bases
AGAAGGAAAAAACGAACGAGAATACGTTCGTTTTTTCTTTTTGTATAGAGGGAAATTTTTAAGCGGCATAATTACTTTTT
TGTAATATAGGTACTTTTTT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDGVIERKVYNQVPPKVEYSLTD
YGHSLDAILDSLCNWGEHHLEKNGNTSMLITAAE

Sequences:

>Translated_114_residues
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDGVIERKVYNQVPPKVEYSLTD
YGHSLDAILDSLCNWGEHHLEKNGNTSMLITAAE
>Mature_114_residues
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDGVIERKVYNQVPPKVEYSLTD
YGHSLDAILDSLCNWGEHHLEKNGNTSMLITAAE

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=94, Percent_Identity=37.2340425531915, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13027; Mature: 13027

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDG
CCCCCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VIERKVYNQVPPKVEYSLTDYGHSLDAILDSLCNWGEHHLEKNGNTSMLITAAE
CHHHHHHHCCCCCEEEEHHCCCCCHHHHHHHHHCCHHHHHCCCCCCEEEEEECC
>Mature Secondary Structure
MKTYNIPVEATLQVIGGKWKVVILCHLKKDKKRTCELKQLMSGITQKMLTQQLRELEEDG
CCCCCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VIERKVYNQVPPKVEYSLTDYGHSLDAILDSLCNWGEHHLEKNGNTSMLITAAE
CHHHHHHHCCCCCEEEEHHCCCCCHHHHHHHHHCCHHHHHCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]