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The map label for this gene is yocS [H]

Identifier: 49477708

GI number: 49477708

Start: 3344215

End: 3345183

Strand: Reverse

Name: yocS [H]

Synonym: BT9727_3277

Alternate gene names: 49477708

Gene position: 3345183-3344215 (Counterclockwise)

Preceding gene: 49478981

Following gene: 49479483

Centisome position: 63.87

GC content: 37.46

Gene sequence:

>969_bases
GTGAAAGTACTAGAAGCGATAAGTAATATAGCTGTAAAGTATTTTGCATTTTGGGTTATTTGTATTGCAACTATTGCGTA
TTTTATTCCCGCTCCATTTCTCGGGTTAAATAGTTACATAACGATTTTACTCGGGGTTGTCATGTTTGGGATGGGGTTAA
CATTAAAGGCTGTTGATTTTAAAATCATTGCTACAAAACCATTGCCAGTTATTATCGGTGTATGTGCTCAGTTTATTATT
ATGCCACTTGTCGCATACGTACTAGCCTACGTTATGAATCTGCCAGCCGAATTAGCAGCTGGATTAGTGTTGCTCGGTGC
AGTACCGGGTGGCACTGCATCAAATGTTATGGTTTATTTAGCAAAAGGGAACTTAGCGCTGTCTATTGCGATGACGTCAT
TATCAACGTTACTAGCACCAATCGCTACACCTCTTATTTTACTATTACTTGCAGGACAATGGATGCCGGTTAATCCTATG
TCTATGTTTCTTTCTATCGTCCAAGTTATTATCATACCGATTATTTTAGGATTAGTAGTGAAGAAGTTTTTCCCGAAAAC
TGTTACGAAAGGAATGACCGTTATCCCTTTCATATCAGTTTTAGCAATTATCATTATTGTTTCAGCGGTAGTTTCAGCAA
ATGTAAGTAGTATTACTTCTTCAGGTCTTCTTATCTTTATTGCCGTTATGCTTCATAATGCTTTCGGTTTTTTACTTGGG
TATATAACAGCATTCATACTTAAACTAGACGAAGGGACAAGAAGAGCTATTTCAATAGAAGTAGGAATGCAAAACTCAGG
CTTAGGCGTTGCACTGGCAACAGCACATTTTGGACCAGCTGCTGCACTTCCAAGTGTATTAGCAGCAGTATGGCATAACA
TTGCAGGACCGATTTTAGCAACCATTTGGTCAAAAAATGCAAAGAATACTTTTAGTGATGAAAATGTATCGGTAAATATA
GAAAAATAG

Upstream 100 bases:

>100_bases
GCGGCATTACTCGTAATGGAAAAAATAAAGAAAGCTCTTGATCCGCAAAATATTTTGAATCCGAATAAGGTGTTTCAATT
AAAGGATAGGAGCTGATCGG

Downstream 100 bases:

>100_bases
GAATGATAAAGAATGCAAAAACGCATTGTACATTTTGAAGGCTTAGTTGTATTCATAGCTACGATTTATATGTATTCATT
ATATGAATTTAGTTGGATTA

Product: bile acid transporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKVLEAISNIAVKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFII
MPLVAYVLAYVMNLPAELAAGLVLLGAVPGGTASNVMVYLAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPM
SMFLSIVQVIIIPIILGLVVKKFFPKTVTKGMTVIPFISVLAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
YITAFILKLDEGTRRAISIEVGMQNSGLGVALATAHFGPAAALPSVLAAVWHNIAGPILATIWSKNAKNTFSDENVSVNI
EK

Sequences:

>Translated_322_residues
MKVLEAISNIAVKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFII
MPLVAYVLAYVMNLPAELAAGLVLLGAVPGGTASNVMVYLAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPM
SMFLSIVQVIIIPIILGLVVKKFFPKTVTKGMTVIPFISVLAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
YITAFILKLDEGTRRAISIEVGMQNSGLGVALATAHFGPAAALPSVLAAVWHNIAGPILATIWSKNAKNTFSDENVSVNI
EK
>Mature_322_residues
MKVLEAISNIAVKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFII
MPLVAYVLAYVMNLPAELAAGLVLLGAVPGGTASNVMVYLAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPM
SMFLSIVQVIIIPIILGLVVKKFFPKTVTKGMTVIPFISVLAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
YITAFILKLDEGTRRAISIEVGMQNSGLGVALATAHFGPAAALPSVLAAVWHNIAGPILATIWSKNAKNTFSDENVSVNI
EK

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=254, Percent_Identity=29.5275590551181, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=32.4561403508772, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=32.4561403508772, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI215422368, Length=228, Percent_Identity=32.4561403508772, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI4506971, Length=265, Percent_Identity=29.811320754717, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI58219066, Length=240, Percent_Identity=28.75, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI37537552, Length=233, Percent_Identity=27.0386266094421, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI115533076, Length=110, Percent_Identity=42.7272727272727, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 34014; Mature: 34014

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLEAISNIAVKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
KIIATKPLPVIIGVCAQFIIMPLVAYVLAYVMNLPAELAAGLVLLGAVPGGTASNVMVYL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCCCEEEEE
AKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLVV
ECCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KKFFPKTVTKGMTVIPFISVLAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHH
YITAFILKLDEGTRRAISIEVGMQNSGLGVALATAHFGPAAALPSVLAAVWHNIAGPILA
HHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TIWSKNAKNTFSDENVSVNIEK
HHHCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MKVLEAISNIAVKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
KIIATKPLPVIIGVCAQFIIMPLVAYVLAYVMNLPAELAAGLVLLGAVPGGTASNVMVYL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCCCEEEEE
AKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLVV
ECCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KKFFPKTVTKGMTVIPFISVLAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHH
YITAFILKLDEGTRRAISIEVGMQNSGLGVALATAHFGPAAALPSVLAAVWHNIAGPILA
HHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TIWSKNAKNTFSDENVSVNIEK
HHHCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]