| Definition | Bartonella henselae str. Houston-1, complete genome. |
|---|---|
| Accession | NC_005956 |
| Length | 1,931,047 |
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The map label for this gene is rho [H]
Identifier: 49476319
GI number: 49476319
Start: 1929137
End: 1930402
Strand: Reverse
Name: rho [H]
Synonym: BH16700
Alternate gene names: 49476319
Gene position: 1930402-1929137 (Counterclockwise)
Preceding gene: NA
Following gene: 49476318
Centisome position: 99.97
GC content: 34.83
Gene sequence:
>1266_bases ATGCAAGAAATGAAACTACAAGAACTTAAAAGTAAAAATCCCGTTGAACTTGTTTTTTTTGCTGAAACATTAGAAGTTGA AAATGCTTCTCTTATGCGTAAACAAGAATTAATGTTTGCTATTTTGAAAAAACTTGCTTTGCAAGATGTAGAAATTATAG GAGAAGGAGTTGTTGAAGTTTTACAAGATGGATTTGGATTTTTGCGATCTGCCGATGCAAATTATCTTCCCGGGCCTGAT GATATTTATCTTTCACCTGCGCAAATTCAATCTTTTTCTTTAAAAACGGGGGATACTATTGAAGGTCCTATACGGAGTCC AAAGGAAGGAGAGCGTTATTTTGCTCTTCTCAAAATTAATACAATTAATTTTGAAAATCCCGAAAAAATTCGTTATAAAA TACATTTTGATAATCTCACCCCTCTTTATTCAAACGAACGTTTTCAAATGGAAATACAAGATCCTACTGAGAAGGATATG TCATCACGGGTGATTGATTTGATCTCTCCCTTGGGAAAAGGACAGAGAGGTCTTATTGTAGCACCTCCTAGAACAGGAAA AACTGTTTTACTTCAAAATATTGCTCATTCTATTACCACTAATCATCCTGAATGTTATCTTATTGTCCTTTTAATCGATG AAAGGCCAGAAGAAGTCACTGATATGCAACGTTCTGTAAAAGGAGAGGTGGTTTCTTCTACTTTTGATGAACCAGCAATA CGTCATGTACAAGTAGCTGAAATGGTTATTGAAAAAGCCAAACGTCTCGTTGAATATGGGCGTGATGTGGTTATTCTTCT TGATTCTATTACACGTTTAGGACGTGCTTATAATACAGTCGTTCCTTCATCAGGTAAGGTTTTGACAGGTGGTGTAGATG CAAATGCTTTGCAGCGTCCAAAACGTTTTTTTGGGGCAGCACGTAATATTGAAGAAGGTGGATCTTTAACTATTATTGCA ACGGCTTTGATTGATACAGGTAGCCGTATGGATGAAGTTATTTTTGAAGAATTTAAAGGAACGGGTAATTCGGAAATTGT TCTTGATCGTAAAGTTGCTGATAAGCGTATTTTTCCTGCTATGGATATTTTAAAGTCAGGAACACGTAAGGAAGAACTTT TAGTAGCACGACAAGATTTACATAAAATTTTTGTACTTCGTCGCATTTTAGCACCTATGAATGTTACAGATGCAATTGAA TTTTTGATTGACAAGTTAAAACAAACAAAAAACAATAGTGAATTTTTTGATTCAATGAATACGTAG
Upstream 100 bases:
>100_bases GTATAGAATATTCCTACCTTACTAAAAGTGTTCTATTCTTTAAATTTCCCATAAATTGATTTTAAAAAACAATTTCCCCA CCTACTAAAGAGCGTATTTC
Downstream 100 bases:
>100_bases AAGTTTTAAGTTTTTTGATTTAGGATAATCCTGTGGATACAATCTTTGCTGTTTCGAGTGGATTGTTGCCTTCAGGGGTT GCTGTCATTCGGCTTTCAGG
Product: transcription termination factor Rho
Products: NA
Alternate protein names: ATP-dependent helicase Rho [H]
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MQEMKLQELKSKNPVELVFFAETLEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPD DIYLSPAQIQSFSLKTGDTIEGPIRSPKEGERYFALLKINTINFENPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDM SSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAI RHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIA TALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVTDAIE FLIDKLKQTKNNSEFFDSMNT
Sequences:
>Translated_421_residues MQEMKLQELKSKNPVELVFFAETLEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPD DIYLSPAQIQSFSLKTGDTIEGPIRSPKEGERYFALLKINTINFENPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDM SSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAI RHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIA TALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVTDAIE FLIDKLKQTKNNSEFFDSMNT >Mature_421_residues MQEMKLQELKSKNPVELVFFAETLEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEVLQDGFGFLRSADANYLPGPD DIYLSPAQIQSFSLKTGDTIEGPIRSPKEGERYFALLKINTINFENPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDM SSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAI RHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIA TALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVTDAIE FLIDKLKQTKNNSEFFDSMNT
Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]
COG id: COG1158
COG function: function code K; Transcription termination factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rho family [H]
Homologues:
Organism=Escherichia coli, GI1790217, Length=416, Percent_Identity=68.5096153846154, Blast_Score=599, Evalue=1e-173,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR011112 - InterPro: IPR011113 - InterPro: IPR004665 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]
EC number: NA
Molecular weight: Translated: 47402; Mature: 47402
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEMKLQELKSKNPVELVFFAETLEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEV CCCCCHHHHCCCCCEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTIEGPIRSPKEGERYFALLKIN HHHHHHHHHCCCCCCCCCCCCEEECHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEEEEE TINFENPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIV EECCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEE APPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAI ECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCHHH RHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP HHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHH KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA HHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHCCCCCHH MDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVTDAIEFLIDKLKQTKNNSEFFDSMN HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCC T C >Mature Secondary Structure MQEMKLQELKSKNPVELVFFAETLEVENASLMRKQELMFAILKKLALQDVEIIGEGVVEV CCCCCHHHHCCCCCEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTIEGPIRSPKEGERYFALLKIN HHHHHHHHHCCCCCCCCCCCCEEECHHHHHEEECCCCCCCCCCCCCCCCCCEEEEEEEEE TINFENPEKIRYKIHFDNLTPLYSNERFQMEIQDPTEKDMSSRVIDLISPLGKGQRGLIV EECCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEE APPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAI ECCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCHHH RHVQVAEMVIEKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP HHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHH KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA HHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHCCCCCHH MDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVTDAIEFLIDKLKQTKNNSEFFDSMN HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCC T C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8606169 [H]